de.jstacs.data.alphabets

Class DNAAlphabetContainer

java.lang.Object

de.jstacs.data.AlphabetContainer

de.jstacs.data.alphabets.DNAAlphabetContainer

All Implemented Interfaces:

InstantiableFromParameterSet, Singleton, Storable, Comparable<AlphabetContainer>

public final class DNAAlphabetContainer
extends AlphabetContainer
implements Singleton

This class implements a singleton for an AlphabetContainer that can be used for DNA.

Author:

Jens Keilwagen, Jan Grau

See Also:

Singleton, DNAAlphabet, DNADataSet

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	DNAAlphabetContainer.DNAAlphabetContainerParameterSet This class implements a singleton for the ParameterSet of a DNAAlphabetContainer.

Nested classes/interfaces inherited from class de.jstacs.data.AlphabetContainer

AlphabetContainer.AbstractAlphabetContainerParameterSet<T extends AlphabetContainer>, AlphabetContainer.AlphabetContainerType

Nested classes/interfaces inherited from interface de.jstacs.Singleton

Singleton.SingletonHandler

Field Summary

Fields

Modifier and Type	Field and Description
static DNAAlphabetContainer	SINGLETON The only instance of this class.

Fields inherited from class de.jstacs.data.AlphabetContainer

parameters

Method Summary

Methods inherited from class de.jstacs.data.AlphabetContainer

checkConsistency, compareTo, getAlphabetAt, getAlphabetIndexForPosition, getAlphabetLengthAt, getCode, getCompositeContainer, getCurrentParameterSet, getDelim, getIndexForAlphabets, getMaximalAlphabetLength, getMin, getMinimalAlphabetLength, getNumberOfAlphabets, getPossibleLength, getSimplifiedAlphabetContainer, getSubContainer, getSymbol, getType, ignoresCase, insertAlphabet, isDiscrete, isDiscreteAt, isEncodedSymbol, isReverseComplementable, isSimple, toDiscrete, toString, toXML

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

SINGLETON

public static final DNAAlphabetContainer SINGLETON

The only instance of this class.

See Also:

Singleton