de.jstacs.parameters

Class InstanceParameterSet<T extends InstantiableFromParameterSet>

java.lang.Object

de.jstacs.parameters.ParameterSet

de.jstacs.parameters.InstanceParameterSet<T>

Type Parameters:

T - the type of the InstanceParameterSet

All Implemented Interfaces:

GalaxyConvertible, Storable, Cloneable

Direct Known Subclasses:

AbstractBurnInTestParameterSet, AbstractTerminationCondition.AbstractTerminationConditionParameterSet, Alphabet.AlphabetParameterSet, AlphabetContainer.AbstractAlphabetContainerParameterSet, Measure.MeasureParameterSet, SequenceScoringParameterSet

public abstract class InstanceParameterSet<T extends InstantiableFromParameterSet>
extends ParameterSet

Container class for a set of Parameters that can be used to instantiate another class.

Author:

Jens Keilwagen, Jan Grau

Nested Class Summary

Nested classes/interfaces inherited from class de.jstacs.parameters.ParameterSet

ParameterSet.ParameterList

Field Summary

Fields inherited from class de.jstacs.parameters.ParameterSet

errorMessage, parameters, parent

Constructor Summary

Constructors

Constructor and Description
InstanceParameterSet(Class<? extends T> instanceClass) Constructs an InstanceParameterSet from the class that can be instantiated using this InstanceParameterSet.
InstanceParameterSet(StringBuffer representation) The standard constructor for the interface Storable.

Method Summary

Modifier and Type	Method and Description
protected void	fromXML(StringBuffer representation) Parses the instance fields of a ParameterSet from the XML representation as returned by ParameterSet.toXML().
T	getInstance() Returns a new instance of the class of getInstanceClass() that was created using this ParameterSet.
Class<? extends T>	getInstanceClass() Returns the class of the instances that can be constructed using this set.
abstract String	getInstanceComment() Returns a comment (a textual description) of the class that can be constructed using this ParameterSet.
abstract String	getInstanceName() Returns the name of an instance of the class that can be constructed using this ParameterSet.
StringBuffer	toXML() This method returns an XML representation as StringBuffer of an instance of the implementing class.

Methods inherited from class de.jstacs.parameters.ParameterSet

clone, fromGalaxy, getAllParameterNames, getComment, getComment, getErrorMessage, getIndex, getName, getName, getNumberOfParameters, getParameterAt, getParameterForName, getParent, hasDefaultOrIsSet, initParameterList, initParameterList, isAtomic, isComparable, parametersLoaded, reset, setParent, toGalaxy

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

InstanceParameterSet

public InstanceParameterSet(Class<? extends T> instanceClass)

Constructs an InstanceParameterSet from the class that can be instantiated using this InstanceParameterSet.

Parameters:

instanceClass - the class to be instantiated

InstanceParameterSet

public InstanceParameterSet(StringBuffer representation)
                     throws NonParsableException

The standard constructor for the interface Storable. Constructs an InstanceParameterSet out of an XML representation.

Parameters:

representation - the XML representation as StringBuffer

Throws:

NonParsableException - if the InstanceParameterSet could not be reconstructed out of the StringBuffer representation

Method Detail

getInstanceClass

public Class<? extends T> getInstanceClass()

Returns the class of the instances that can be constructed using this set.

Returns:

the class of the instances

getInstance

public T getInstance()
              throws ParameterSetParser.NotInstantiableException

Returns a new instance of the class of getInstanceClass() that was created using this ParameterSet.

Returns:

the new instance of the class

Throws:

ParameterSetParser.NotInstantiableException - if the class could not be instantiated

See Also:

ParameterSetParser

getInstanceComment

public abstract String getInstanceComment()

Returns a comment (a textual description) of the class that can be constructed using this ParameterSet.

Returns:

the comment of the class

getInstanceName

public abstract String getInstanceName()

Returns the name of an instance of the class that can be constructed using this ParameterSet.

Returns:

the name of the class

toXML

public StringBuffer toXML()

Description copied from interface: Storable

This method returns an XML representation as StringBuffer of an instance of the implementing class.

Specified by:

toXML in interface Storable

Overrides:

toXML in class ParameterSet

Returns:

the XML representation

fromXML

protected void fromXML(StringBuffer representation)
                throws NonParsableException

Description copied from class: ParameterSet

Parses the instance fields of a ParameterSet from the XML representation as returned by ParameterSet.toXML().

Overrides:

fromXML in class ParameterSet

Parameters:

representation - the XML representation as StringBuffer

Throws:

NonParsableException - if the XML code could not be parsed

See Also:

ParameterSet.toXML()