Uses of Class
de.jstacs.results.ImageResult

Packages that use ImageResult

Package	Description
de.jstacs.classifiers	This package provides the framework for any classifier.
de.jstacs.classifiers.utils	Provides some useful classes for working with classifiers.
de.jstacs.data	Provides classes for the representation of data. The base classes to represent data are Alphabet and AlphabetContainer for representing alphabets, Sequence and its sub-classes to represent continuous and discrete sequences, and DataSet to represent data sets comprising a set of sequences.
de.jstacs.motifDiscovery	This package provides the framework including the interface for any de novo motif discoverer.
de.jstacs.tools.ui.galaxy

Uses of ImageResult in de.jstacs.classifiers

Methods in de.jstacs.classifiers that return ImageResult

Modifier and Type	Method and Description
static ImageResult	AbstractScoreBasedClassifier.DoubleTableResult.plot(REnvironment e, AbstractScoreBasedClassifier.DoubleTableResult... dtr) This method plots an array of AbstractScoreBasedClassifier.DoubleTableResults in one image.

Uses of ImageResult in de.jstacs.classifiers.utils

Methods in de.jstacs.classifiers.utils that return ImageResult

Modifier and Type	Method and Description
static ImageResult	ClassificationVisualizer.getFancyScatterplot(AbstractScoreBasedClassifier cl1, AbstractScoreBasedClassifier cl2, REnvironment e, DataSet... data) Scatters the classification scores of two binary classifiers for given data.
static ImageResult	ClassificationVisualizer.getScatterplot(AbstractScoreBasedClassifier cl1, AbstractScoreBasedClassifier cl2, DataSet class0, DataSet class1, REnvironment e, boolean drawThreshold) This method returns an ImageResult containing a scatter plot of the scores for the given classifiers cl1 and cl2.
static ImageResult	ClassificationVisualizer.plotScores(AbstractScoreBasedClassifier cl, DataSet class0, DataSet class1, REnvironment e, int bins, double density, String plotOptions) This method returns an ImageResult containing a plot of the histograms of the scores.

Uses of ImageResult in de.jstacs.data

Methods in de.jstacs.data that return ImageResult

Modifier and Type	Method and Description
static ImageResult	DinucleotideProperty.getPropertyImage(DataSet original, DinucleotideProperty prop, DinucleotideProperty.Smoothing smoothing, REnvironment re, int xLeft, String pltOptions, int width, int height)
static ImageResult	DinucleotideProperty.getPropertyImage(Sequence original, DinucleotideProperty prop, DinucleotideProperty.Smoothing smoothing, REnvironment re, int xLeft, String pltOptions, int width, int height)

Uses of ImageResult in de.jstacs.motifDiscovery

Methods in de.jstacs.motifDiscovery that return ImageResult

Modifier and Type	Method and Description
static ImageResult	MotifDiscovererToolBox.plot(MotifDiscoverer motifDisc, int component, int motif, Sequence sequence, int startpos, REnvironment r, int width, int height, MotifDiscoverer.KindOfProfile kind) This method creates a simple plot of the profile of scores for a sequence and a start position.
static ImageResult	MotifDiscovererToolBox.plotAndAnnotate(MotifDiscoverer motifDisc, int component, int motif, Sequence sequence, int startpos, REnvironment r, int width, int height, double yMin, double yMax, double threshold, MotifDiscoverer.KindOfProfile kind) This method creates a plot of the profile of scores for a sequence and a start position and annotates bindings sites in the plot that have a higher score than threshold.

Uses of ImageResult in de.jstacs.tools.ui.galaxy

Subclasses of ImageResult in de.jstacs.tools.ui.galaxy

Modifier and Type	Class and Description
static class	GalaxyAdaptor.LinkedImageResult Class for an ImageResult that is linked to a file that can be downloaded.