Uses of Package
de.jstacs.sequenceScores.differentiable

Packages that use de.jstacs.sequenceScores.differentiable

Package	Description
de.jstacs.classifiers	This package provides the framework for any classifier.
de.jstacs.classifiers.differentiableSequenceScoreBased	Provides the classes for Classifiers that are based on SequenceScores. It includes a sub-package for discriminative objective functions, namely conditional likelihood and supervised posterior, and a separate sub-package for the parameter priors, that can be used for the supervised posterior.
de.jstacs.classifiers.differentiableSequenceScoreBased.gendismix	Provides an implementation of a classifier that allows to train the parameters of a set of DifferentiableStatisticalModels by a unified generative-discriminative learning principle.
de.jstacs.classifiers.differentiableSequenceScoreBased.logPrior	Provides a general definition of a parameter log-prior and a number of implementations of Laplace and Gaussian priors.
de.jstacs.classifiers.differentiableSequenceScoreBased.msp	Provides an implementation of a classifier that allows to train the parameters of a set of DifferentiableStatisticalModels either by maximum supervised posterior (MSP) or by maximum conditional likelihood (MCL).
de.jstacs.motifDiscovery	This package provides the framework including the interface for any de novo motif discoverer.
de.jstacs.sequenceScores.differentiable
de.jstacs.sequenceScores.differentiable.logistic
de.jstacs.sequenceScores.statisticalModels.differentiable	Provides all DifferentiableStatisticalModels, which can compute the gradient with respect to their parameters for a given input Sequence.
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels	Provides DifferentiableStatisticalModels that are directed graphical models.
de.jstacs.sequenceScores.statisticalModels.differentiable.homogeneous	Provides DifferentiableStatisticalModels that are homogeneous, i.e.
de.jstacs.sequenceScores.statisticalModels.differentiable.localMixture
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture	Provides DifferentiableSequenceScores that are mixtures of other DifferentiableSequenceScores.
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models	The package provides different implementations of hidden Markov models based on AbstractHMM.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.classifiers

Class and Description
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.classifiers.differentiableSequenceScoreBased

Class and Description
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.classifiers.differentiableSequenceScoreBased.gendismix

Class and Description
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.classifiers.differentiableSequenceScoreBased.logPrior

Class and Description
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.classifiers.differentiableSequenceScoreBased.msp

Class and Description
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.motifDiscovery

Class and Description
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.differentiable

Class and Description
AbstractDifferentiableSequenceScore This class is the main part of any ScoreClassifier.
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.
IndependentProductDiffSS This class enables the user to model parts of a sequence independent of each other.
MultiDimensionalSequenceWrapperDiffSS This class implements a simple wrapper for multidimensional sequences.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.differentiable.logistic

Class and Description
AbstractDifferentiableSequenceScore This class is the main part of any ScoreClassifier.
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable

Class and Description
AbstractDifferentiableSequenceScore This class is the main part of any ScoreClassifier.
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.
IndependentProductDiffSS This class enables the user to model parts of a sequence independent of each other.
UniformDiffSS This DifferentiableSequenceScore does nothing.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels

Class and Description
AbstractDifferentiableSequenceScore This class is the main part of any ScoreClassifier.
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable.homogeneous

Class and Description
AbstractDifferentiableSequenceScore This class is the main part of any ScoreClassifier.
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable.localMixture

Class and Description
AbstractDifferentiableSequenceScore This class is the main part of any ScoreClassifier.
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable.mixture

Class and Description
AbstractDifferentiableSequenceScore This class is the main part of any ScoreClassifier.
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif

Class and Description
AbstractDifferentiableSequenceScore This class is the main part of any ScoreClassifier.
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.

Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models

Class and Description
DifferentiableSequenceScore This interface is the main part of any ScoreClassifier.