| Package | Description |
|---|---|
| de.jstacs.tools | |
| de.jstacs.tools.ui.cli | |
| de.jstacs.tools.ui.galaxy |
| Modifier and Type | Method and Description |
|---|---|
ToolResult |
JstacsTool.run(ParameterSet parameters,
Protocol protocol,
ProgressUpdater progress,
int threads)
Runs the tool using the provided (now filled) parameters, which are in structure identical to those returned by
JstacsTool.getToolParameters(). |
| Modifier and Type | Class and Description |
|---|---|
static class |
CLI.SysProtocol
Class for a
Protocol that prints messages to System.out and warnings to System.err
and additionally hold a log of all messages in a local StringBuffer that may be, e.g., stored to a file later. |
| Modifier and Type | Class and Description |
|---|---|
static class |
GalaxyAdaptor.Protocol
Class for a Protocol writer.
|