Package de.jstacs.algorithms.alignment

Provides classes for alignments.

See: Description

Class Summary

Class	Description
Alignment	Class for computing optimal alignments using Needleman-Wunsch algorithm of for affine gap costs Gotohs algorithm.
PairwiseStringAlignment	Class for the representation of an alignment of two Strings.
StringAlignment	Class for the representation of an alignment of Strings.

Enum Summary

Enum	Description
Alignment.AlignmentType

Package de.jstacs.algorithms.alignment Description

Provides classes for alignments.