Uses of Class
de.jstacs.data.DataSet.WeightedDataSetFactory.SortOperation

Packages that use DataSet.WeightedDataSetFactory.SortOperation

Package	Description
de.jstacs.data	Provides classes for the representation of data. The base classes to represent data are Alphabet and AlphabetContainer for representing alphabets, Sequence and its sub-classes to represent continuous and discrete sequences, and DataSet to represent data sets comprising a set of sequences.
de.jstacs.motifDiscovery	This package provides the framework including the interface for any de novo motif discoverer.

Uses of DataSet.WeightedDataSetFactory.SortOperation in de.jstacs.data

Methods in de.jstacs.data that return DataSet.WeightedDataSetFactory.SortOperation

Modifier and Type	Method and Description
static DataSet.WeightedDataSetFactory.SortOperation	DataSet.WeightedDataSetFactory.SortOperation.valueOf(String name) Returns the enum constant of this type with the specified name.
static DataSet.WeightedDataSetFactory.SortOperation[]	DataSet.WeightedDataSetFactory.SortOperation.values() Returns an array containing the constants of this enum type, in the order they are declared.

Constructors in de.jstacs.data with parameters of type DataSet.WeightedDataSetFactory.SortOperation

Constructor and Description
WeightedDataSetFactory(DataSet.WeightedDataSetFactory.SortOperation sort, DataSet... data) Creates a new DataSet.WeightedDataSetFactory on the given DataSet(s) with DataSet.WeightedDataSetFactory.SortOperation sort.
WeightedDataSetFactory(DataSet.WeightedDataSetFactory.SortOperation sort, DataSet[] data, double[][] weights, int length) Creates a new DataSet.WeightedDataSetFactory on the given array of DataSets and an array of weights with a given length and DataSet.WeightedDataSetFactory.SortOperation sort.
WeightedDataSetFactory(DataSet.WeightedDataSetFactory.SortOperation sort, DataSet data, double[] weights) Creates a new DataSet.WeightedDataSetFactory on the given DataSet and an array of weights with DataSet.WeightedDataSetFactory.SortOperation sort.
WeightedDataSetFactory(DataSet.WeightedDataSetFactory.SortOperation sort, DataSet data, double[] weights, int length) Creates a new DataSet.WeightedDataSetFactory on the given DataSet and an array of weights with a given length and DataSet.WeightedDataSetFactory.SortOperation sort.

Uses of DataSet.WeightedDataSetFactory.SortOperation in de.jstacs.motifDiscovery

Methods in de.jstacs.motifDiscovery with parameters of type DataSet.WeightedDataSetFactory.SortOperation

Modifier and Type	Method and Description
static DataSet.WeightedDataSetFactory	KMereStatistic.getAbsoluteKMereFrequencies(DataSet data, int k, boolean bothStrands, DataSet.WeightedDataSetFactory.SortOperation sortOp) This method enables the user to get a statistic over all k-mers in the data.