public class CisRegulatoryModuleAnnotation extends SequenceAnnotation
MotifAnnotation
s of the motifs in the module.MotifAnnotation
Constructor and Description |
---|
CisRegulatoryModuleAnnotation(StringBuffer representation)
The standard constructor for the interface
Storable . |
CisRegulatoryModuleAnnotation(String identifier,
MotifAnnotation[] motifs,
Result... additionalAnnotation)
Creates a new
CisRegulatoryModuleAnnotation from a set of motifs
and possibly additional annotations. |
fromXML, getAnnotations, getIdentifier, getSubAnnotations, getType, hashCode, toString, toXML
findColumn, getNumberOfResults, getResultAt, getResultForName, getResults
public CisRegulatoryModuleAnnotation(String identifier, MotifAnnotation[] motifs, Result... additionalAnnotation)
CisRegulatoryModuleAnnotation
from a set of motifs
and possibly additional annotations.identifier
- the identifier of this annotationmotifs
- the motifs in the moduleadditionalAnnotation
- the additional annotationsSequenceAnnotation.SequenceAnnotation(String, String,
SequenceAnnotation[], Result...)
public CisRegulatoryModuleAnnotation(StringBuffer representation) throws NonParsableException
Storable
.
Creates a new CisRegulatoryModuleAnnotation
out of its XML
representation.representation
- the XML representation as StringBuffer
NonParsableException
- if the CisRegulatoryModuleAnnotation
could not be
reconstructed out of the XML representation (the
StringBuffer
representation
could not be
parsed)SequenceAnnotation.SequenceAnnotation(StringBuffer)
,
Storable