Uses of Class
de.jstacs.data.sequences.annotation.LocatedSequenceAnnotationWithLength

Packages that use LocatedSequenceAnnotationWithLength

Package	Description
de.jstacs.data.sequences.annotation	Provides the facilities to annotate Sequences using a number of pre-defined annotation types, or additional implementations of the SequenceAnnotation class.

Uses of LocatedSequenceAnnotationWithLength in de.jstacs.data.sequences.annotation

Subclasses of LocatedSequenceAnnotationWithLength in de.jstacs.data.sequences.annotation

Modifier and Type	Class and Description
class	IntronAnnotation Annotation class for an intron as defined by a donor and an acceptor splice site.
class	MotifAnnotation Class for a StrandedLocatedSequenceAnnotationWithLength that is a motif.
class	StrandedLocatedSequenceAnnotationWithLength Class for a SequenceAnnotation that has a position, a length and an orientation on the strand of a Sequence.

Methods in de.jstacs.data.sequences.annotation with parameters of type LocatedSequenceAnnotationWithLength

Modifier and Type	Method and Description
boolean	LocatedSequenceAnnotationWithLength.overlaps(LocatedSequenceAnnotationWithLength second) Returns true if this LocatedSequenceAnnotationWithLength overlaps with the location of second.