Package | Description |
---|---|
de.jstacs.data.sequences.annotation |
Provides the facilities to annotate
Sequence s using a number of pre-defined annotation types, or additional
implementations of the SequenceAnnotation class. |
Modifier and Type | Class and Description |
---|---|
class |
IntronAnnotation
Annotation class for an intron as defined by a donor and an acceptor splice
site.
|
class |
MotifAnnotation
Class for a
StrandedLocatedSequenceAnnotationWithLength that is a
motif. |
class |
StrandedLocatedSequenceAnnotationWithLength
Class for a
SequenceAnnotation that has a position, a length and an
orientation on the strand of a Sequence . |
Modifier and Type | Method and Description |
---|---|
boolean |
LocatedSequenceAnnotationWithLength.overlaps(LocatedSequenceAnnotationWithLength second)
|