Package | Description |
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de.jstacs.motifDiscovery |
This package provides the framework including the interface for any de novo motif discoverer.
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Modifier and Type | Method and Description |
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static MutableMotifDiscovererToolbox.InitMethodForDiffSM |
MutableMotifDiscovererToolbox.InitMethodForDiffSM.valueOf(String name)
Returns the enum constant of this type with the specified name.
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static MutableMotifDiscovererToolbox.InitMethodForDiffSM[] |
MutableMotifDiscovererToolbox.InitMethodForDiffSM.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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Modifier and Type | Method and Description |
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static ComparableElement<double[],Double>[] |
MutableMotifDiscovererToolbox.getSortedInitialParameters(DifferentiableSequenceScore[] funs,
MutableMotifDiscovererToolbox.InitMethodForDiffSM[] init,
DiffSSBasedOptimizableFunction opt,
int n,
OutputStream stream,
int optimizationSteps)
This method allows to initialize the
DifferentiableSequenceScore using different MutableMotifDiscovererToolbox.InitMethodForDiffSM . |