| Package | Description |
|---|---|
| de.jstacs.motifDiscovery |
This package provides the framework including the interface for any de novo motif discoverer.
|
| Modifier and Type | Class and Description |
|---|---|
static class |
SignificantMotifOccurrencesFinder.SumOfProbabilities
Joins several profiles containing log-probabilities into one profile containing
the logarithm of the sum of the probabilities of the single profiles.
|
| Constructor and Description |
|---|
SignificantMotifOccurrencesFinder(MotifDiscoverer disc,
SignificantMotifOccurrencesFinder.JoinMethod joiner,
DataSet bg,
double[] weights,
double sign)
This constructor creates an instance of
SignificantMotifOccurrencesFinder that uses a DataSet to determine the siginificance level. |
SignificantMotifOccurrencesFinder(MotifDiscoverer disc,
SignificantMotifOccurrencesFinder.RandomSeqType type,
SignificantMotifOccurrencesFinder.JoinMethod joiner,
boolean oneHistogram,
int numSequences,
double sign)
This constructor creates an instance of
SignificantMotifOccurrencesFinder that uses the given SignificantMotifOccurrencesFinder.RandomSeqType to determine the siginificance level. |