Package | Description |
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de.jstacs.motifDiscovery |
This package provides the framework including the interface for any de novo motif discoverer.
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Modifier and Type | Method and Description |
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static SignificantMotifOccurrencesFinder.RandomSeqType |
SignificantMotifOccurrencesFinder.RandomSeqType.valueOf(String name)
Returns the enum constant of this type with the specified name.
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static SignificantMotifOccurrencesFinder.RandomSeqType[] |
SignificantMotifOccurrencesFinder.RandomSeqType.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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Constructor and Description |
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SignificantMotifOccurrencesFinder(MotifDiscoverer disc,
SignificantMotifOccurrencesFinder.RandomSeqType type,
boolean oneHistogram,
int numSequences,
double sign)
This constructor creates an instance of
SignificantMotifOccurrencesFinder that uses the given SignificantMotifOccurrencesFinder.RandomSeqType to determine the siginificance level. |
SignificantMotifOccurrencesFinder(MotifDiscoverer disc,
SignificantMotifOccurrencesFinder.RandomSeqType type,
SignificantMotifOccurrencesFinder.JoinMethod joiner,
boolean oneHistogram,
int numSequences,
double sign)
This constructor creates an instance of
SignificantMotifOccurrencesFinder that uses the given SignificantMotifOccurrencesFinder.RandomSeqType to determine the siginificance level. |