de.jstacs.parameters

Class SelectionParameter

java.lang.Object

de.jstacs.AnnotatedEntity

de.jstacs.parameters.Parameter

de.jstacs.parameters.AbstractSelectionParameter

de.jstacs.parameters.SelectionParameter

All Implemented Interfaces:

GalaxyConvertible, Rangeable, Storable, Cloneable

Direct Known Subclasses:

EnumParameter

public class SelectionParameter
extends AbstractSelectionParameter
implements Rangeable, GalaxyConvertible

Class for a collection parameter, i.e. a parameter that provides some collection of possible values the user can choose from. Instances of this class can be used as parameters in a ParameterSet.

Author:

Jan Grau

See Also:

ParameterSet

Nested Class Summary

Nested classes/interfaces inherited from class de.jstacs.parameters.AbstractSelectionParameter

AbstractSelectionParameter.InconsistentCollectionException

Field Summary

Fields inherited from class de.jstacs.parameters.AbstractSelectionParameter

errorMessage, parameters, userSelected

Fields inherited from class de.jstacs.parameters.Parameter

parent

Fields inherited from class de.jstacs.AnnotatedEntity

comment, datatype, name

Constructor Summary

Constructors

Constructor and Description
SelectionParameter(DataType datatype, String[] keys, Object[] values, String[] comments, String name, String comment, boolean required) Constructor for a SelectionParameter.
SelectionParameter(DataType datatype, String[] keys, Object[] values, String name, String comment, boolean required) Constructor for a SelectionParameter.
SelectionParameter(StringBuffer representation) The standard constructor for the interface Storable.
SelectionParameter(String name, String comment, boolean required, Class<? extends ParameterSet>... values) Constructor for a SelectionParameter from an array of Classes of ParameterSets.
SelectionParameter(String name, String comment, boolean required, ParameterSet... values) Constructor for a SelectionParameter from an array of ParameterSets.

Method Summary

Modifier and Type	Method and Description
protected void	appendFurtherInfos(StringBuffer buf) This method can be used in the method Storable.toXML() to extract further information (name, comment, datatype).
protected void	extractFurtherInfos(StringBuffer representation) This method can be used in the constructor with parameter StringBuffer to extract the further information.
void	fromGalaxy(String namePrefix, StringBuffer command) Parses the contents of command in the format defined by configBuffer of GalaxyConvertible.toGalaxy(String, String, int, StringBuffer, StringBuffer, boolean) and sets the values of the Parameter or ParameterSet accordingly.
protected int	getDefault() Returns the index of the default selected value.
String	getErrorMessage() If a value could not be set successfully this method returns the corresponding error message.
int	getSelected() Returns the index of the selected value.
Object	getValue() Returns the value of the AnnotatedEntity.
String	getXMLTag() This method returns a tag used as outer tag of the XML description.
boolean	hasDefault() Returns true, if this SelectionParameter has a default value.
boolean	hasDefaultOrIsSet() Returns true if the parameter either has a default value or the value was set by the user, false otherwise.
boolean	isSelected(int idx) Returns true if the option at position idx is selected.
void	reset() Resets the parameter and its contents to the default values or null if no defaults are given.
void	setDefault(Object defaultValue) Sets the default value of this AbstractSelectionParameter to defaultValue.
void	setValue(Object value) Sets the selected value to the one that is specified by the key value.
String	toString()

Methods inherited from class de.jstacs.parameters.AbstractSelectionParameter

check, checkValue, clone, createParameterSet, equals, getParametersInCollection, getRangedInstance, isAtomic, isComparable, isRangeable, isRequired, isSet, isUserSelected, setRangeable, toGalaxy

Methods inherited from class de.jstacs.parameters.Parameter

getParent, setParent

Methods inherited from class de.jstacs.AnnotatedEntity

getComment, getDatatype, getName, toXML

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface de.jstacs.parameters.Rangeable

getRangedInstance, isRangeable

Methods inherited from interface de.jstacs.parameters.GalaxyConvertible

toGalaxy

Constructor Detail

SelectionParameter

public SelectionParameter(DataType datatype,
                          String[] keys,
                          Object[] values,
                          String name,
                          String comment,
                          boolean required)
                   throws AbstractSelectionParameter.InconsistentCollectionException,
                          SimpleParameter.IllegalValueException,
                          SimpleParameter.DatatypeNotValidException

Constructor for a SelectionParameter.

Parameters:

datatype - the data type of the parameters in the collection

keys - the keys/names of the values in the collection, this is the name the user will see in the user interface

values - the values the names stand for, this array must be of the same length as keys, a key at a certain position belongs to the value at the same position in the array

name - the name of the parameter

comment - a comment on the parameter

required - true if this SelectionParameter is required, false otherwise

Throws:

InconsistentCollectionException - if the length of keys and the values is different or the collection is inconsistent for some other reason

SimpleParameter.IllegalValueException - if one of the values in values is not of type datatype

SimpleParameter.DatatypeNotValidException - if the datatype is not one of the allowed values

AbstractSelectionParameter.InconsistentCollectionException

See Also:

AbstractSelectionParameter.AbstractSelectionParameter(DataType, String[], Object[], String[], String, String, boolean)

SelectionParameter

public SelectionParameter(DataType datatype,
                          String[] keys,
                          Object[] values,
                          String[] comments,
                          String name,
                          String comment,
                          boolean required)
                   throws AbstractSelectionParameter.InconsistentCollectionException,
                          SimpleParameter.IllegalValueException,
                          SimpleParameter.DatatypeNotValidException

Constructor for a SelectionParameter.

Parameters:

datatype - the data type of the parameters in the collection

keys - the keys/names of the values in the collection, this is the name the user will see in the user interface

values - the values the names stand for, this array must be of the same length as keys, a key at a certain position belongs to the value at the same position in the array

comments - the comments on the possible values

name - the name of the parameter

comment - a comment on the parameter

required - true if the SelectionParameter is required, false otherwise

Throws:

InconsistentCollectionException - if the length of keys and values is different or the collection is inconsistent for some other reason

SimpleParameter.IllegalValueException - if one of the values in values is not of type datatype

SimpleParameter.DatatypeNotValidException - if the datatype is not one of the allowed values

AbstractSelectionParameter.InconsistentCollectionException

See Also:

AbstractSelectionParameter.createParameterSet(Object[], String[], String[])

SelectionParameter

public SelectionParameter(String name,
                          String comment,
                          boolean required,
                          ParameterSet... values)

Constructor for a SelectionParameter from an array of ParameterSets. This constructor can be used to easily construct a SelectionParameter that lets the user select from a list of possible options that all require an own set of Parameters to be instantiated.

Parameters:

values - the array of ParameterSets

name - the name of the parameter

comment - a comment on the parameter

required - true if the parameter is required, false otherwise

See Also:

AbstractSelectionParameter.createParameterSet(Object[], String[], String[])

SelectionParameter

public SelectionParameter(String name,
                          String comment,
                          boolean required,
                          Class<? extends ParameterSet>... values)

Constructor for a SelectionParameter from an array of Classes of ParameterSets. This constructor can be used to easily construct a SelectionParameter that lets the user select from a list of possible options that all require an own set of Parameters to be instantiated. It is the lazy evaluation variant of SelectionParameter(String, String, boolean, ParameterSet...), i.e., the ParameterSets are only created if necessary.

Parameters:

values - the array of Classes of ParameterSets

name - the name of the parameter

comment - a comment on the parameter

required - true if the parameter is required, false otherwise

See Also:

AbstractSelectionParameter.createParameterSet(Object[], String[], String[])

SelectionParameter

public SelectionParameter(StringBuffer representation)
                   throws NonParsableException

The standard constructor for the interface Storable. Restores an instance of SelectionParameter from a XML representation.

Parameters:

representation - the XML representation as StringBuffer

Throws:

NonParsableException - if the StringBuffer representation could not be parsed

Method Detail

hasDefault

public boolean hasDefault()

Returns true, if this SelectionParameter has a default value.

Specified by:

hasDefault in class AbstractSelectionParameter

Returns:

if this SelectionParameter has a default value

See Also:

AbstractSelectionParameter.setDefault(Object)

hasDefaultOrIsSet

public boolean hasDefaultOrIsSet()

Description copied from class: Parameter

Returns true if the parameter either has a default value or the value was set by the user, false otherwise.

Specified by:

hasDefaultOrIsSet in class Parameter

Returns:

true if value has a default value or was set, false otherwise

getErrorMessage

public String getErrorMessage()

Description copied from class: Parameter

If a value could not be set successfully this method returns the corresponding error message.

Overrides:

getErrorMessage in class AbstractSelectionParameter

Returns:

an error message if a value could not be set successfully

getXMLTag

public String getXMLTag()

Description copied from class: AnnotatedEntity

This method returns a tag used as outer tag of the XML description.

Specified by:

getXMLTag in class AnnotatedEntity

Returns:

a tag used as outer tag of the XML description

appendFurtherInfos

protected void appendFurtherInfos(StringBuffer buf)

Description copied from class: AnnotatedEntity

This method can be used in the method Storable.toXML() to extract further information (name, comment, datatype).

Overrides:

appendFurtherInfos in class AbstractSelectionParameter

Parameters:

buf - a XML representation of the main information as StringBuffer

See Also:

Storable.toXML()

extractFurtherInfos

protected void extractFurtherInfos(StringBuffer representation)
                            throws NonParsableException

Description copied from class: AnnotatedEntity

This method can be used in the constructor with parameter StringBuffer to extract the further information.

Overrides:

extractFurtherInfos in class AbstractSelectionParameter

Parameters:

representation - a XML represenation of the main information as StringBuffer

Throws:

NonParsableException - if the XML representation is not parsable

See Also:

AnnotatedEntity.AnnotatedEntity(StringBuffer)

isSelected

public boolean isSelected(int idx)

Returns true if the option at position idx is selected.

Specified by:

isSelected in class AbstractSelectionParameter

Parameters:

idx - the position

Returns:

true if the option at position idx is selected, false otherwise

getSelected

public int getSelected()

Returns the index of the selected value.

Returns:

the index of the selected value

getDefault

protected int getDefault()

Returns the index of the default selected value.

Returns:

the index of the default selected value

setValue

public void setValue(Object value)
              throws SimpleParameter.IllegalValueException

Sets the selected value to the one that is specified by the key value.

Specified by:

setValue in class Parameter

Parameters:

value - the key of the desired value

Throws:

SimpleParameter.IllegalValueException - if the specified value is not valid for this Parameter

setDefault

public void setDefault(Object defaultValue)
                throws SimpleParameter.IllegalValueException

Description copied from class: AbstractSelectionParameter

Sets the default value of this AbstractSelectionParameter to defaultValue. This method also sets the current value of this AbstractSelectionParameter to the default and resets it such that AbstractSelectionParameter.isUserSelected() returns false.

Specified by:

setDefault in class AbstractSelectionParameter

Parameters:

defaultValue - the default value

Throws:

SimpleParameter.IllegalValueException

reset

public void reset()

Description copied from class: Parameter

Resets the parameter and its contents to the default values or null if no defaults are given.

Specified by:

reset in class Parameter

getValue

public Object getValue()

Description copied from class: AnnotatedEntity

Returns the value of the AnnotatedEntity.

Specified by:

getValue in class AnnotatedEntity

Returns:

the value of the AnnotatedEntity

toString

public String toString()

Overrides:

toString in class Object

fromGalaxy

public void fromGalaxy(String namePrefix,
                       StringBuffer command)
                throws Exception

Description copied from interface: GalaxyConvertible

Parses the contents of command in the format defined by configBuffer of GalaxyConvertible.toGalaxy(String, String, int, StringBuffer, StringBuffer, boolean) and sets the values of the Parameter or ParameterSet accordingly.

Specified by:

fromGalaxy in interface GalaxyConvertible

Parameters:

namePrefix - the prefix of the variable name

command - the command string

Throws:

Exception - if the command string could not be parsed