de.jstacs.sampling

Class AbstractBurnInTestParameterSet

java.lang.Object

de.jstacs.parameters.ParameterSet

de.jstacs.parameters.InstanceParameterSet<AbstractBurnInTest>

de.jstacs.sampling.AbstractBurnInTestParameterSet

All Implemented Interfaces:

GalaxyConvertible, Storable, Cloneable

Direct Known Subclasses:

VarianceRatioBurnInTestParameterSet

public abstract class AbstractBurnInTestParameterSet
extends InstanceParameterSet<AbstractBurnInTest>

Class for the parameters of a AbstractBurnInTest. This class fulfills the requirements of a InstanceParameterSet and can be used to create a new AbstractBurnInTest.

Author:

Jens Keilwagen

Nested Class Summary

Nested classes/interfaces inherited from class de.jstacs.parameters.ParameterSet

ParameterSet.ParameterList

Field Summary

Fields inherited from class de.jstacs.parameters.ParameterSet

errorMessage, parameters, parent

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	AbstractBurnInTestParameterSet(Class<? extends AbstractBurnInTest> instanceClass) Creates a new AbstractBurnInTestParameterSet with empty parameter values.
protected	AbstractBurnInTestParameterSet(Class<? extends AbstractBurnInTest> instanceClass, int starts) Creates a new AbstractBurnInTestParameterSet with pre-defined parameter values.
protected	AbstractBurnInTestParameterSet(StringBuffer representation) The standard constructor for the interface Storable.

Method Summary

Modifier and Type	Method and Description
AbstractBurnInTestParameterSet	clone() Creates a full clone (deep copy) of this ParameterSet.
int	getNumberOfStarts() Returns the number of starts.

Methods inherited from class de.jstacs.parameters.InstanceParameterSet

fromXML, getInstance, getInstanceClass, getInstanceComment, getInstanceName, toXML

Methods inherited from class de.jstacs.parameters.ParameterSet

fromGalaxy, getAllParameterNames, getComment, getComment, getErrorMessage, getIndex, getName, getName, getNumberOfParameters, getParameterAt, getParameterForName, getParent, hasDefaultOrIsSet, initParameterList, initParameterList, isAtomic, isComparable, parametersLoaded, reset, setParent, toGalaxy

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractBurnInTestParameterSet

protected AbstractBurnInTestParameterSet(Class<? extends AbstractBurnInTest> instanceClass)
                                  throws IllegalArgumentException

Creates a new AbstractBurnInTestParameterSet with empty parameter values.

Parameters:

instanceClass - the class to be instantiated

Throws:

IllegalArgumentException - if instanceClass is null

AbstractBurnInTestParameterSet

protected AbstractBurnInTestParameterSet(Class<? extends AbstractBurnInTest> instanceClass,
                                         int starts)
                                  throws IllegalArgumentException,
                                         SimpleParameter.IllegalValueException

Creates a new AbstractBurnInTestParameterSet with pre-defined parameter values.

Parameters:

instanceClass - the class to be instantiated

starts - the number of runs the Gibbs Sampler will be started

Throws:

IllegalArgumentException - if instanceClass is null

SimpleParameter.IllegalValueException - if starts can not be set

AbstractBurnInTestParameterSet

protected AbstractBurnInTestParameterSet(StringBuffer representation)
                                  throws NonParsableException

The standard constructor for the interface Storable. Constructs an AbstractBurnInTestParameterSet out of an XML representation.

Parameters:

representation - the XML representation as StringBuffer

Throws:

NonParsableException - if the AbstractBurnInTestParameterSet could not be reconstructed out of the StringBuffer representation

Method Detail

getNumberOfStarts

public int getNumberOfStarts()

Returns the number of starts.

Returns:

the number of starts

clone

public AbstractBurnInTestParameterSet clone()
                                     throws CloneNotSupportedException

Description copied from class: ParameterSet

Creates a full clone (deep copy) of this ParameterSet. As a convenience-method the user can use fillWithStandardFieldsForClone(ParameterSet) on a newly created instance of a subclass of ParameterSet to obtain a clone/copy of all standard member variables (those already defined in ParameterSet) in the passed ParameterSet. Using this method, the cloning process becomes merely three-step:

• Create a new instance of your subclass of ParameterSet, most likely with an empty constructor or the one taking just the instance class.
• Call this.fillWithStandardFieldsForClone on this instance.
• Return the instance.

This method fulfills the conventions of Object's method Object.clone().

Overrides:

clone in class ParameterSet

Returns:

a deep clone/copy of this ParameterSet

Throws:

CloneNotSupportedException