Package | Description |
---|---|
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels |
Provides
DifferentiableStatisticalModel s that are directed graphical models. |
Modifier and Type | Field and Description |
---|---|
protected BNDiffSMParameter[] |
BayesianNetworkDiffSM.parameters
The parameters of the scoring function.
|
Modifier and Type | Method and Description |
---|---|
BNDiffSMParameter |
BNDiffSMParameter.clone() |
BNDiffSMParameter |
BNDiffSMParameterTree.getParameterFor(int[] seq,
int start)
Returns the
BNDiffSMParameter that is responsible for the suffix of
sequence seq starting at position start . |
BNDiffSMParameter |
BNDiffSMParameterTree.getParameterFor(Sequence seq,
int start)
Returns the
BNDiffSMParameter that is responsible for the suffix of
sequence seq starting at position start . |
Modifier and Type | Method and Description |
---|---|
LinkedList<BNDiffSMParameter> |
BNDiffSMParameterTree.linearizeParameters()
Extracts the
BNDiffSMParameter s from the leaves of this tree in
left-to-right order (as specified by the order of the alphabet) and
returns them as a LinkedList . |
Modifier and Type | Method and Description |
---|---|
void |
BNDiffSMParameterTree.setParameterFor(int symbol,
int[][] context,
BNDiffSMParameter par)
Sets the instance of the
BNDiffSMParameter for symbol symbol and
context context to BNDiffSMParameter par . |