Class and Description |
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DifferentiableStatisticalModel
The interface for normalizable
DifferentiableSequenceScore s. |
Class and Description |
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DifferentiableStatisticalModel
The interface for normalizable
DifferentiableSequenceScore s. |
Class and Description |
---|
DifferentiableStatisticalModel
The interface for normalizable
DifferentiableSequenceScore s. |
Class and Description |
---|
SamplingDifferentiableStatisticalModel
Interface for
DifferentiableStatisticalModel s that can be used for
Metropolis-Hastings sampling in a SamplingScoreBasedClassifier . |
Class and Description |
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AbstractDifferentiableStatisticalModel
This class is the main part of any
ScoreClassifier . |
AbstractVariableLengthDiffSM
This abstract class implements some methods declared in
DifferentiableStatisticalModel based on the declaration
of methods in VariableLengthDiffSM . |
CyclicMarkovModelDiffSM
This scoring function implements a cyclic Markov model of arbitrary order and periodicity for any sequence length.
|
DifferentiableStatisticalModel
The interface for normalizable
DifferentiableSequenceScore s. |
IndependentProductDiffSM
This class enables the user to model parts of a sequence independent of each
other.
|
MappingDiffSM
This class implements a
DifferentiableStatisticalModel that works on
mapped Sequence s. |
MarkovRandomFieldDiffSM
This class implements the scoring function for any MRF (Markov Random Field).
|
NormalizedDiffSM
This class makes an unnormalized
DifferentiableStatisticalModel to a normalized DifferentiableStatisticalModel . |
SamplingDifferentiableStatisticalModel
Interface for
DifferentiableStatisticalModel s that can be used for
Metropolis-Hastings sampling in a SamplingScoreBasedClassifier . |
VariableLengthDiffSM
This is an interface for all
DifferentiableStatisticalModel s that allow to score
subsequences of arbitrary length. |
Class and Description |
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AbstractDifferentiableStatisticalModel
This class is the main part of any
ScoreClassifier . |
DifferentiableStatisticalModel
The interface for normalizable
DifferentiableSequenceScore s. |
SamplingDifferentiableStatisticalModel
Interface for
DifferentiableStatisticalModel s that can be used for
Metropolis-Hastings sampling in a SamplingScoreBasedClassifier . |
Class and Description |
---|
AbstractDifferentiableStatisticalModel
This class is the main part of any
ScoreClassifier . |
AbstractVariableLengthDiffSM
This abstract class implements some methods declared in
DifferentiableStatisticalModel based on the declaration
of methods in VariableLengthDiffSM . |
DifferentiableStatisticalModel
The interface for normalizable
DifferentiableSequenceScore s. |
SamplingDifferentiableStatisticalModel
Interface for
DifferentiableStatisticalModel s that can be used for
Metropolis-Hastings sampling in a SamplingScoreBasedClassifier . |
VariableLengthDiffSM
This is an interface for all
DifferentiableStatisticalModel s that allow to score
subsequences of arbitrary length. |
Class and Description |
---|
AbstractDifferentiableStatisticalModel
This class is the main part of any
ScoreClassifier . |
DifferentiableStatisticalModel
The interface for normalizable
DifferentiableSequenceScore s. |
Class and Description |
---|
AbstractDifferentiableStatisticalModel
This class is the main part of any
ScoreClassifier . |
DifferentiableStatisticalModel
The interface for normalizable
DifferentiableSequenceScore s. |
SamplingDifferentiableStatisticalModel
Interface for
DifferentiableStatisticalModel s that can be used for
Metropolis-Hastings sampling in a SamplingScoreBasedClassifier . |
VariableLengthDiffSM
This is an interface for all
DifferentiableStatisticalModel s that allow to score
subsequences of arbitrary length. |
Class and Description |
---|
AbstractDifferentiableStatisticalModel
This class is the main part of any
ScoreClassifier . |
DifferentiableStatisticalModel
The interface for normalizable
DifferentiableSequenceScore s. |
SamplingDifferentiableStatisticalModel
Interface for
DifferentiableStatisticalModel s that can be used for
Metropolis-Hastings sampling in a SamplingScoreBasedClassifier . |
Class and Description |
---|
DifferentiableStatisticalModel
The interface for normalizable
DifferentiableSequenceScore s. |
Class and Description |
---|
DifferentiableStatisticalModel
The interface for normalizable
DifferentiableSequenceScore s. |
SamplingDifferentiableStatisticalModel
Interface for
DifferentiableStatisticalModel s that can be used for
Metropolis-Hastings sampling in a SamplingScoreBasedClassifier . |