Package de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous

This package contains various inhomogeneous models.

See: Description

Class Summary

Class	Description
BayesianNetworkTrainSM	The class implements a Bayesian network ( StructureLearner.ModelType.BN ) of fixed order.
CombinationIterator	This class can be used for iterating over all possible combinations (in the sense of combinatorics).
DAGTrainSM	The abstract class for directed acyclic graphical models (DAGTrainSM).
FSDAGModelForGibbsSampling	This is the class for a fixed structure directed acyclic graphical model (see FSDAGTrainSM) that can be used in a Gibbs sampling.
FSDAGTrainSM	This class can be used for any discrete fixed structure directed acyclic graphical model ( FSDAGTrainSM).
FSMEManager	This class can be used for any discrete fixed structure maximum entropy model (FSMEM).
InhCondProb	This class handles (conditional) probabilities of sequences for inhomogeneous models.
InhConstraint	This class is the superclass for all inhomogeneous constraints.
InhomogeneousDGTrainSM	This class is the main class for all inhomogeneous discrete graphical models (InhomogeneousDGTrainSM).
MEM	This class represents a maximum entropy model.
MEManager	This class is the super class for all maximum entropy models
MEMConstraint	This constraint can be used for any maximum entropy model (MEM) application.
MEMTools
MEMTools.DualFunction	The dual function to the constraint problem of learning MEM's.
SequenceIterator	This class is used to iterate over a discrete sequence.
StructureLearner	This class can be used to learn the structure of any discrete model.
TwoPointEvaluater	This class is for visualizing two point dependency between sequence positions.

Enum Summary

Enum	Description
StructureLearner.LearningType	This enum defines the different types of learning that are possible with the StructureLearner.
StructureLearner.ModelType	This enum defines the different types of models that can be learned with the StructureLearner.

Package de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous Description

This package contains various inhomogeneous models. The most interesting classes are

1. BayesianNetworkTrainSM, which is either an inhomogeneous Markov model, a permuted Markov model or a Bayesian network
2. FSDAGTrainSM, which is a model on a fixed structure of a directed acyclic graph
3. ...

The parameters for all models is located in the subpackage parameters

See Also:

de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.parameters