public class FSDAGModelForGibbsSamplingParameterSet extends FSDAGTrainSMParameterSet
FSDAGModelForGibbsSampling
.FSDAGModelForGibbsSampling
ParameterSet.ParameterList
alphabet, length
errorMessage, parameters, parent
Constructor and Description |
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FSDAGModelForGibbsSamplingParameterSet()
This is the constructor that creates an empty parameter set for a
FSDAGModelForGibbsSampling . |
FSDAGModelForGibbsSamplingParameterSet(AlphabetContainer alphabet,
int length,
double ess,
String description,
String graph)
This is the constructor that creates a filled parameter set.
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FSDAGModelForGibbsSamplingParameterSet(StringBuffer s)
The constructor for the
Storable interface. |
encode, getInstanceComment
getModelInstanceName
clone, getInstanceName, hasDefaultOrIsSet, setEss
equals, fromXML, getAlphabetContainer, getLength, getNumberOfParameters, getParameterAt, reset, toXML
getInstance, getInstanceClass
fromGalaxy, getAllParameterNames, getComment, getComment, getErrorMessage, getIndex, getName, getName, getParameterForName, getParent, initParameterList, initParameterList, isAtomic, isComparable, parametersLoaded, setParent, toGalaxy
public FSDAGModelForGibbsSamplingParameterSet(StringBuffer s) throws NonParsableException
Storable
interface. Creates a
new FSDAGModelForGibbsSamplingParameterSet
out of its XML
representation.s
- the XML representation as StringBuffer
NonParsableException
- if the StringBuffer
is not parsablepublic FSDAGModelForGibbsSamplingParameterSet()
FSDAGModelForGibbsSampling
.public FSDAGModelForGibbsSamplingParameterSet(AlphabetContainer alphabet, int length, double ess, String description, String graph) throws Exception
alphabet
- the alphabet container that is used in the modellength
- the length of the model (has to be positive)ess
- the ess (equivalent sample size, has to
be positive)description
- a short description of the model (used for a better handling
of the object by the user)graph
- the graph description string, encodes in XML-like manner the
parents of each node "<parents
node=i>j,k,l</parents>"Exception
- if something went wrongFSDAGTrainSMParameterSet.encode(int[][])