| Class | Description |
|---|---|
| AbstractConditionalDiscreteEmission |
The abstract super class of discrete emissions.
|
| DiscreteEmission |
This class implements a simple discrete emission without any condition.
|
| PhyloDiscreteEmission |
Phylogenetic discrete emission
This class uses a phylogenetic tree to describe multidimensional data
It implements Felsensteins model for nucleotide substitution (F81)
|
| ReferenceSequenceDiscreteEmission |
This class implements a discrete emission that depends on some
ReferenceSequenceAnnotation
at a certain reference position. |