de.jstacs.sequenceScores.statisticalModels.trainable.hmm.training

Class HMMTrainingParameterSet

java.lang.Object

de.jstacs.parameters.ParameterSet

de.jstacs.sequenceScores.statisticalModels.trainable.hmm.training.HMMTrainingParameterSet

All Implemented Interfaces:

GalaxyConvertible, Storable, Cloneable

Direct Known Subclasses:

MaxHMMTrainingParameterSet, SamplingHMMTrainingParameterSet

public abstract class HMMTrainingParameterSet
extends ParameterSet

This class implements an abstract ParameterSet that is used for the training of an AbstractHMM.

Author:

Jens Keilwagen

Nested Class Summary

Nested classes/interfaces inherited from class de.jstacs.parameters.ParameterSet

ParameterSet.ParameterList

Field Summary

Fields inherited from class de.jstacs.parameters.ParameterSet

errorMessage, parameters, parent

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	HMMTrainingParameterSet() This is the empty constructor that can be used to fill the parameters after creation.
protected	HMMTrainingParameterSet(int starts) This constructor can be used to create an instance with a specified number of starts.
protected	HMMTrainingParameterSet(StringBuffer xml) The standard constructor for the interface Storable.

Method Summary

Modifier and Type	Method and Description
int	getNumberOfStarts() The method returns the number of different starts.

Methods inherited from class de.jstacs.parameters.ParameterSet

clone, fromGalaxy, fromXML, getAllParameterNames, getComment, getComment, getErrorMessage, getIndex, getName, getName, getNumberOfParameters, getParameterAt, getParameterForName, getParent, hasDefaultOrIsSet, initParameterList, initParameterList, isAtomic, isComparable, parametersLoaded, reset, setParent, toGalaxy, toXML

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HMMTrainingParameterSet

protected HMMTrainingParameterSet()

This is the empty constructor that can be used to fill the parameters after creation.

HMMTrainingParameterSet

protected HMMTrainingParameterSet(int starts)
                           throws SimpleParameter.IllegalValueException

This constructor can be used to create an instance with a specified number of starts.

Parameters:

starts - the number of different starts

Throws:

SimpleParameter.IllegalValueException - if the parameter can not be set

HMMTrainingParameterSet

protected HMMTrainingParameterSet(StringBuffer xml)
                           throws NonParsableException

The standard constructor for the interface Storable. Constructs a HMMTrainingParameterSet out of an XML representation.

Parameters:

xml - the XML representation as StringBuffer

Throws:

NonParsableException - if the HMMTrainingParameterSet could not be reconstructed out of the StringBuffer xml

Method Detail

getNumberOfStarts

public int getNumberOfStarts()

The method returns the number of different starts.

Returns:

the number of starts