Package | Description |
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de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models |
The package provides different implementations of hidden Markov models based on
AbstractHMM . |
Constructor and Description |
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SamplingHigherOrderHMM(SamplingHMMTrainingParameterSet trainingParameterSet,
String[] name,
int[] emissionIdx,
boolean[] forward,
SamplingEmission[] emission,
TransitionElement... te)
This is the main constructor.
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SamplingPhyloHMM(SamplingHMMTrainingParameterSet trainingParameterSet,
String[] name,
int[] emissionIdx,
boolean[] forward,
PhyloDiscreteEmission[] emission,
TransitionElement... te)
This is the main constructor for a hidden markov model with phylogenetic emission(s)
This model can be trained using a metropolis hastings algorithm
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