Uses of Class
de.jstacs.utils.PFMComparator.PFMDistance

Packages that use PFMComparator.PFMDistance

Package	Description
de.jstacs.utils	This package contains a bundle of useful classes and interfaces like ...

Uses of PFMComparator.PFMDistance in de.jstacs.utils

Subclasses of PFMComparator.PFMDistance in de.jstacs.utils

Modifier and Type	Class and Description
static class	PFMComparator.NormalizedEuclideanDistance This class implements the normalized Euclidean distance.
static class	PFMComparator.OneMinusPearsonCorrelationCoefficient This class implements the Pearson correlation coefficient.
static class	PFMComparator.SymmetricKullbackLeiblerDivergence This class implements the symmetric Kullback-Leibler-divergence.
static class	PFMComparator.UniformBorderWrapper Wraps a given PFMComparator.PFMDistance and pads the considered PFMs with uniformly distributed positions.

Methods in de.jstacs.utils with parameters of type PFMComparator.PFMDistance

Modifier and Type	Method and Description
static ComparableElement<String,Double>[]	PFMComparator.find(ComplementableDiscreteAlphabet abc, double[][] pfm, ArrayList<AbstractMap.SimpleEntry<String,double[][]>> knownPFMs, PFMComparator.PFMDistance distance, int minOverlap, int allowMiniShift, boolean pValues, double threshold) This methods finds for a user specified PFM pfm similar PFMs in a list of known PFMs.

Constructors in de.jstacs.utils with parameters of type PFMComparator.PFMDistance

Constructor and Description
UniformBorderWrapper(PFMComparator.PFMDistance inner) Creates a new PFMComparator.UniformBorderWrapper for a given PFMComparator.PFMDistance.