User contributions for Keilwagen
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15 March 2016
- 14:2114:21, 15 March 2016 diff hist +373 GeMoMa No edit summary
18 February 2016
- 10:0810:08, 18 February 2016 diff hist +220 Main Page →Latest Papers
- 10:0710:07, 18 February 2016 diff hist +269 GeMoMa →Paper
1 February 2016
- 14:5714:57, 1 February 2016 diff hist +218 Projects No edit summary
16 October 2015
- 10:1610:16, 16 October 2015 diff hist +8,958 N GeMoMa Created page with "by Jens Keilwagen, Michael Wenk, Jessica L. Erickson, Martin H. Schattat, Jan Grau, and Frank Hartung '''Ge'''ne '''Mo'''del '''Ma'''pper (GeMoMa) is a homology-based gene predi..."
6 February 2015
- 10:2310:23, 6 February 2015 diff hist +266 Dispom No edit summary current
22 December 2014
- 15:5415:54, 22 December 2014 diff hist +9 Slim No edit summary
- 15:5315:53, 22 December 2014 diff hist +11,561 N Slim Created page with "by Jens Keilwagen Jan Grau '''S'''parse '''l'''ocal '''i'''nhomogeneous '''m'''ixture (Slim) models are statistical models for discrete sequences (as for instance DNA sequences)..."
21 March 2014
- 13:2913:29, 21 March 2014 diff hist +198 Main Page →Latest Papers
3 June 2013
- 07:5207:52, 3 June 2013 diff hist +1 m Version history No edit summary
- 07:5207:52, 3 June 2013 diff hist +139 m Version history Restructuring
- 07:3407:34, 3 June 2013 diff hist +12 Version history No edit summary
11 March 2013
- 22:5722:57, 11 March 2013 diff hist +20 N ChIPper moved ChIPper to Dimont: name conflict with existing bioinformatics tool current
- 22:5722:57, 11 March 2013 diff hist 0 m Dimont moved ChIPper to Dimont: name conflict with existing bioinformatics tool
21 February 2013
- 12:5712:57, 21 February 2013 diff hist +254 Main Page No edit summary
- 10:5910:59, 21 February 2013 diff hist +217 FlowCap No edit summary current
1 November 2012
- 10:5610:56, 1 November 2012 diff hist −13 Acknowledgements No edit summary
14 May 2012
- 09:5109:51, 14 May 2012 diff hist +140 First main course: SequenceScores No edit summary current
- 09:5009:50, 14 May 2012 diff hist +8,686 Recipes No edit summary current
- 09:4909:49, 14 May 2012 diff hist +6,461 N Quick start: Jstacs in a nutshell Created page with "This section is for the unpatient who like to directly start using Jstacs without reading the complete cookbook. If you do not belong to this group, you can skip this section. H..." current
- 08:3208:32, 14 May 2012 diff hist +1,805 Cookbook No edit summary
25 April 2012
- 10:2110:21, 25 April 2012 diff hist +99 Projects No edit summary
3 February 2012
- 11:4611:46, 3 February 2012 diff hist +4,948 Version history No edit summary
2 February 2012
- 16:1316:13, 2 February 2012 diff hist −1,297 Code examples Redirected page to Recipes current
- 16:1116:11, 2 February 2012 diff hist −84 Main Page No edit summary
- 15:4715:47, 2 February 2012 diff hist +21 MediaWiki:Sidebar No edit summary
6 June 2011
- 09:5109:51, 6 June 2011 diff hist +51 Performing a 10-fold cross validation No edit summary current
- 09:5009:50, 6 June 2011 diff hist +899 N Create a discrete alphabet Created page with "'''Create a discrete alphabet:''' <source lang="java5"> String[] symbols = {"A", "C", "G", "T", "-"}; DiscreteAlphabet abc = new DiscreteAlphabet( true, symbols ); </source> '''..." current
- 09:4709:47, 6 June 2011 diff hist +33 m Code examples No edit summary
25 May 2011
- 10:1210:12, 25 May 2011 diff hist +12 Main Page →Latest Paper
- 10:0810:08, 25 May 2011 diff hist +43 m DSHMM No edit summary
- 09:2409:24, 25 May 2011 diff hist +2 m Workshop No edit summary
- 09:2309:23, 25 May 2011 diff hist −5 m Main Page →Workshop
16 May 2011
- 07:1507:15, 16 May 2011 diff hist −25 m Workshop →Program
8 May 2011
- 22:0322:03, 8 May 2011 diff hist +278 m Workshop →Program
6 May 2011
- 12:3712:37, 6 May 2011 diff hist +110 Workshop No edit summary
5 May 2011
- 08:1208:12, 5 May 2011 diff hist +155 m Workshop No edit summary
3 May 2011
- 14:2514:25, 3 May 2011 diff hist +34 m Workshop →Program
- 14:2114:21, 3 May 2011 diff hist +363 m Workshop →Program
- 07:1607:16, 3 May 2011 diff hist +425 m Workshop →Program
2 May 2011
- 21:2321:23, 2 May 2011 diff hist +504 m Workshop →Program
- 11:5211:52, 2 May 2011 diff hist +25 m Main Page →Workshop
- 11:4911:49, 2 May 2011 diff hist +2,913 N Workshop Created page with "__NOTOC__ The first Jstacs workshop will be held on May, 19th at Martin Luther University. The aim of the workshop is to increase the visibility of Jstacs and the implemented pr..."
28 April 2011
- 16:0016:00, 28 April 2011 diff hist +1 Main Page →Workshop
- 15:5915:59, 28 April 2011 diff hist +374 Main Page No edit summary
5 April 2011
- 12:4212:42, 5 April 2011 diff hist −1 Projects No edit summary
- 12:4012:40, 5 April 2011 diff hist +1 Projects No edit summary
- 10:3010:30, 5 April 2011 diff hist −1 Projects No edit summary
- 10:3010:30, 5 April 2011 diff hist +59 DSHMM No edit summary
- 10:2710:27, 5 April 2011 diff hist +1 Projects No edit summary
11 February 2011
- 08:2308:23, 11 February 2011 diff hist +81 Main Page No edit summary
- 08:2108:21, 11 February 2011 diff hist +113 Dispom No edit summary
8 February 2011
- 23:4623:46, 8 February 2011 diff hist −7 Dream5 No edit summary
15 December 2010
- 15:4715:47, 15 December 2010 diff hist +12 DSHMM No edit summary
14 December 2010
- 11:3411:34, 14 December 2010 diff hist −152 DSHMM No edit summary
7 December 2010
- 16:3316:33, 7 December 2010 diff hist −2 DSHMM No edit summary
- 16:3316:33, 7 December 2010 diff hist +103 Projects No edit summary
- 16:3216:32, 7 December 2010 diff hist +1,698 N DSHMM New page: __NOTOC__ by Michael Seifert, Marc Strickert, Alexander Schliep, and Ivo Grosse == Description == === Motivation === Changes in gene expression levels play a central role in tumors. Infor...
12 April 2010
- 12:2212:22, 12 April 2010 diff hist +244 Downloads No edit summary
22 March 2010
- 18:1018:10, 22 March 2010 diff hist +18 Main Page →Latest Paper
- 18:0818:08, 22 March 2010 diff hist +37 Prior No edit summary current
15 March 2010
- 13:2213:22, 15 March 2010 diff hist 0 Dispom No edit summary
- 13:2213:22, 15 March 2010 diff hist +12 Dispom No edit summary
2 March 2010
- 15:1115:11, 2 March 2010 diff hist −11 Main Page →Jstacs
- 15:0615:06, 2 March 2010 diff hist +85 Projects No edit summary
- 11:5211:52, 2 March 2010 diff hist +77 Dispom No edit summary
1 March 2010
- 11:3511:35, 1 March 2010 diff hist −8 Main Page No edit summary
- 10:5110:51, 1 March 2010 diff hist −33 Main Page No edit summary
- 10:4710:47, 1 March 2010 diff hist +47 Projects No edit summary
- 10:4710:47, 1 March 2010 diff hist +27 Dispom No edit summary
- 10:4210:42, 1 March 2010 diff hist +6,973 N Dispom New page: <!--__NOTOC__--> by Jens Keilwagen, Jan Grau, Ivan A. Paponov, Stefan Posch, Marc Strickert and Ivo Grosse. == Description == === Background === Transcription factors are a main component...
- 09:4909:49, 1 March 2010 diff hist +93 Projects No edit summary
- 09:4809:48, 1 March 2010 diff hist +2,932 N Prior New page: __NOTOC__ by Jens Keilwagen, Jan Grau, Stefan Posch, and Ivo Grosse. == Description == === Background === One of the challenges of bioinformatics remains the recognition of short signal s...
26 February 2010
- 16:5516:55, 26 February 2010 diff hist +47 Main Page No edit summary
- 16:2516:25, 26 February 2010 diff hist +169 Main Page No edit summary
23 February 2010
- 08:3208:32, 23 February 2010 diff hist −3 GenDisMix →Paper current
22 February 2010
- 17:0517:05, 22 February 2010 diff hist +120 Main Page No edit summary
- 10:3010:30, 22 February 2010 diff hist −18 Main Page No edit summary
21 January 2010
- 15:3615:36, 21 January 2010 diff hist +220 Projects No edit summary
19 January 2010
- 14:1114:11, 19 January 2010 diff hist +16 Projects No edit summary
- 14:1114:11, 19 January 2010 diff hist +1,956 N GenDisMix New page: __NOTOC__ by Jens Keilwagen, Jan Grau, Stefan Posch, Marc Strickert, and Ivo Grosse. == Description == === Background === The recognition of functional binding sites in genomic DNA remain...
2 December 2009
- 18:3318:33, 2 December 2009 diff hist +135 Code examples No edit summary
- 18:3318:33, 2 December 2009 diff hist +2,122 N Train classifiers using GenDisMix (a hybrid learning principle) New page: <source lang="java5"> //read FastA-files Sample[] data = { new DNASample( args[0] ), new DNASample( args[1] ) }; AlphabetContainer container = data[0].getAlphabetContaine... current
- 18:3018:30, 2 December 2009 diff hist +1,577 N Train classifiers using MCL and MSP New page: <source lang="java5"> //read FastA-files Sample[] data = { new DNASample( args[0] ), new DNASample( args[1] ) }; AlphabetContainer container = data[0].getAlphabetContaine... current
- 16:2716:27, 2 December 2009 diff hist +31 Performing a 10-fold cross validation No edit summary
- 16:2616:26, 2 December 2009 diff hist −131 Saving and loading a model No edit summary current
- 16:2516:25, 2 December 2009 diff hist −187 Training a classifier and classifying new sequences No edit summary
- 15:4615:46, 2 December 2009 diff hist +118 Loading data No edit summary current
19 November 2009
- 18:2518:25, 19 November 2009 diff hist −6,846 Projects Replacing page with 'This site contains projects that use Jstacs. * MotifAdjuster * DiPoMM'
- 18:2218:22, 19 November 2009 diff hist +3,020 N MotifAdjuster New page: __NOTOC__ by Jens Keilwagen, Jan Baumbach, Thomas A. Kohl and Ivo Grosse. == Description == Valuable binding site annotation data are stored in databases. However, several types of errors... current
- 15:4215:42, 19 November 2009 diff hist 0 m Getting started No edit summary
- 15:4115:41, 19 November 2009 diff hist 0 m Getting started No edit summary
- 15:2915:29, 19 November 2009 diff hist +26 m Getting started No edit summary
- 15:2515:25, 19 November 2009 diff hist −1 m Getting started No edit summary
- 15:2415:24, 19 November 2009 diff hist +515 Getting started No edit summary
- 15:0415:04, 19 November 2009 diff hist +7 MiMB →Links
- 14:1114:11, 19 November 2009 diff hist 0 Acknowledgements No edit summary
- 14:0714:07, 19 November 2009 diff hist +308 N MiMB New page: == Probabilistic Approaches to Transcription Factor Binding Site Prediction == by Stefan Posch, Jan Grau, André Gohr, Jens Keilwagen, Ivo Grosse === Abstract === TODO === Links...
- 13:5313:53, 19 November 2009 diff hist +35 MediaWiki:Sidebar No edit summary
- 13:5313:53, 19 November 2009 diff hist −407 Downloads No edit summary
- 13:4813:48, 19 November 2009 diff hist +1,060 N Getting started New page: __NOTOC__ == Basic Requirements == * Make sure that you have installed [http://java.sun.com/javase/downloads/index.jsp Java] 1.5 or later. * Download latest version of [http://www.jstacs.d...
- 13:2413:24, 19 November 2009 diff hist +49 Downloads No edit summary
18 November 2009
- 15:0815:08, 18 November 2009 diff hist −9 MiMB Example No edit summary
- 15:0315:03, 18 November 2009 diff hist +13,030 N MiMB Example New page: '''This class contains all code snippets used in the chapter ''Probabilistic Approaches to Transcription Factor Binding Site Prediction'' of the book ''Computational Biology of Transcripti...
15 August 2009
- 07:2007:20, 15 August 2009 diff hist +422 Projects No edit summary
31 July 2009
- 14:1514:15, 31 July 2009 diff hist 0 Projects No edit summary
4 May 2009
- 08:0508:05, 4 May 2009 diff hist +44 Projects No edit summary
8 April 2009
- 11:2111:21, 8 April 2009 diff hist −9 Projects No edit summary
- 11:1911:19, 8 April 2009 diff hist −9 Projects No edit summary
- 11:1211:12, 8 April 2009 diff hist +1 Version history No edit summary
30 October 2008
- 17:3117:31, 30 October 2008 diff hist +2,566 Projects No edit summary
29 September 2008
- 12:0912:09, 29 September 2008 diff hist +827 N Compute and plot Receiver Operating Characteristic (ROC) and Precision-Recall (PR) curve New page: <source lang="java5"> Sample[] test; AbstractScoreBasedClassifier trainedClassifier; // TODO load data and create trained classifier Measure[] m = { Measure.ReceiverOperatingCharacterist... current
- 12:0812:08, 29 September 2008 diff hist +95 Code examples No edit summary
23 September 2008
- 08:2108:21, 23 September 2008 diff hist +1 FAQs →Using existing models
- 08:2008:20, 23 September 2008 diff hist +1 FAQs →Using existing models
19 September 2008
- 11:3311:33, 19 September 2008 diff hist +879 FAQs No edit summary
18 September 2008
- 13:0613:06, 18 September 2008 diff hist +77 Acknowledgements No edit summary
17 September 2008
- 15:5715:57, 17 September 2008 diff hist +44 N Projects New page: This site contains projects that use Jstacs.
- 14:1814:18, 17 September 2008 diff hist +21 MediaWiki:Sidebar No edit summary
12 September 2008
- 20:5120:51, 12 September 2008 diff hist −4 Performing a 10-fold cross validation No edit summary
- 20:5020:50, 12 September 2008 diff hist +3 Performing a 10-fold cross validation No edit summary
5 September 2008
- 12:3712:37, 5 September 2008 diff hist +180 Code examples No edit summary
- 11:1811:18, 5 September 2008 diff hist −28 FAQs →FAQs & Code examples
- 08:4108:41, 5 September 2008 diff hist +250 Using the REnvironment No edit summary current
- 08:3308:33, 5 September 2008 diff hist −80 Implementation of a homogeneous Markov model of order 0 based on AbstractModel No edit summary
4 September 2008
- 16:1916:19, 4 September 2008 diff hist +34 FAQs No edit summary
- 15:5915:59, 4 September 2008 diff hist +12 FAQs No edit summary
- 15:5815:58, 4 September 2008 diff hist +293 FAQs No edit summary
- 15:4615:46, 4 September 2008 diff hist 0 FAQs No edit summary
- 15:4515:45, 4 September 2008 diff hist +1,414 N FAQs New page: == FAQs & Code examples == Here we collected some questions that were asked quite often ... '''''Q: How to create an AlphabetContainer instance for DNA sequences?'''''<br> '''A:''' ''Alp...
2 September 2008
- 10:4910:49, 2 September 2008 diff hist +145 Main Page No edit summary
- 08:0608:06, 2 September 2008 diff hist +301 Main Page No edit summary
- 07:5607:56, 2 September 2008 diff hist +89 Main Page →A Java framework for statistical analysis and classification of biological sequences
