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• First main course: SequenceScores
  ...If your parameterization is known to be convex, this method should return 1. ...d called <code>getProbFor(sequence.getSubSequence(startpos,endpos-startpos+1))</code>.
  51 KB (6,847 words) - 09:51, 14 May 2012
• TALgetter
  TALgetter is part if Jstacs release 2.1. You find the TALgetter sources in package <code>projects.tals</code>. ...ue of 0 or 1 switches off the filter., valid range = [0.0, 1.0], default = 1.0)</td>
  7 KB (1,140 words) - 21:58, 25 January 2017
• TALENoffer
  ...dium (q=0.4), Medium-Strict (q=0.45), Strict (q=0.5), valid range = [0.35, 1.0], default = 0.4)</td> ...rted targets in all input sequences, ranked by their score, valid range = [1, 100000], default = 100)</td>
  8 KB (1,130 words) - 14:01, 1 September 2013
• Starter: Data handling
  ...ericComplementableDiscreteAlphabet( true, new String[]{"A","B"}, new int[]{1,0} ); ...uot;) by setting the <math>0</math>-th value of the integer array to <math>1</math>.
  31 KB (4,653 words) - 10:41, 3 February 2012
• Catchitt
  * [http://www.jstacs.de/downloads/Catchitt-0.1.4.jar JAR download] ...f cell type-specific transcription factor binding]. ''Genome Biology'', 20(1):9, 2019.
  37 KB (5,644 words) - 22:51, 7 October 2021
• Version history
  .../jstacs/data/bioJava/BioJavaAdapter.html BioJavaAdapter] ported to BioJava 1.9 == Jstacs 2.1 (''released Mai 31, 2013'')==
  23 KB (2,769 words) - 17:39, 8 September 2017
• GeMoMa-Docs
  java -jar GeMoMa-1.9.jar CLI GeMoMaPipeline ...ght that can be used in the filter, valid range = [0.0, 1000.0], default = 1.0, OPTIONAL)</td>
  108 KB (17,041 words) - 22:04, 16 July 2022
• CRISPRer
  ...h (The length of the seed at the 3' end of the protospacer, valid range = [1, 13], default = 12)</td>
  5 KB (837 words) - 22:46, 17 July 2013
• GeMoMa
  java -jar GeMoMa-1.9.jar CLI GeMoMaPipeline threads=<threads> outdir=<outdir> GeMoMa.Score=ReA ...script prediction can be altered using the parameter "tag". Before version 1.7 the default value of tag was "prediction" instead of "mRNA".
  35 KB (5,209 words) - 22:02, 16 July 2022
• Intermediate course: XMLParser, Parameters, and Results
  ..., "The required length of a sequence", true, new NumberValidator<Integer>( 1, 100 ), 10 );
  23 KB (3,359 words) - 10:42, 3 February 2012

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