Package | Description |
---|---|
de.jstacs.data.alphabets |
Provides classes for the representation of discrete and continuous alphabets, including a
DNAAlphabet for the most common case of DNA-sequences. |
Modifier and Type | Class and Description |
---|---|
static class |
ContinuousAlphabet.ContinuousAlphabetParameterSet
Class for the
ParameterSet of a
ContinuousAlphabet . |
static class |
DiscreteAlphabet.DiscreteAlphabetParameterSet
Class for the
ParameterSet of a
DiscreteAlphabet . |
static class |
DNAAlphabet.DNAAlphabetParameterSet
The parameter set for a
DNAAlphabet . |
static class |
GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet
This class is used as container for the parameters of a
GenericComplementableDiscreteAlphabet . |
static class |
IUPACDNAAlphabet.IUPACDNAAlphabetParameterSet
The parameter set for a
IUPACDNAAlphabet . |
static class |
ProteinAlphabet.ProteinAlphabetParameterSet
The parameter set for a
ProteinAlphabet . |
Modifier and Type | Field and Description |
---|---|
protected Alphabet.AlphabetParameterSet |
DiscreteAlphabet.parameters
The parameter set describing this
DiscreteAlphabet . |
Modifier and Type | Method and Description |
---|---|
Alphabet.AlphabetParameterSet |
Alphabet.AlphabetParameterSet.clone() |
Alphabet.AlphabetParameterSet |
GenericComplementableDiscreteAlphabet.getCurrentParameterSet() |
Alphabet.AlphabetParameterSet |
DiscreteAlphabet.getCurrentParameterSet() |