Package | Description |
---|---|
de.jstacs.algorithms.optimization.termination |
Provides classes for termination conditions that can be used in algorithms.
|
de.jstacs.classifiers.assessment |
This package allows to assess classifiers.
It contains the class ClassifierAssessment that
is used as a super-class of all implemented methodologies of
an assessment to assess classifiers. |
de.jstacs.data.alphabets |
Provides classes for the representation of discrete and continuous alphabets, including a
DNAAlphabet for the most common case of DNA-sequences. |
de.jstacs.io |
Provides classes for reading data from and writing to a file and storing a number of datatypes, including all primitives, arrays of primitives, and
Storable s to an XML-representation. |
de.jstacs.parameters |
This package provides classes for parameters that establish a general convention for the description of parameters
as defined in the
Parameter -interface. |
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels.structureLearning.measures.btMeasures |
Provides the facilities to learn the structure of a
BayesianNetworkDiffSM as
a Bayesian tree using a number of measures to define a rating of structures. |
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels.structureLearning.measures.pmmMeasures |
Provides the facilities to learn the structure of a
BayesianNetworkDiffSM as
a permuted Markov model using a number of measures to define a rating of structures. |
de.jstacs.tools | |
de.jstacs.tools.ui.galaxy |
Constructor and Description |
---|
SmallDifferenceOfFunctionEvaluationsConditionParameterSet(double eps)
This constructor creates a filled instance of a parameters set.
|
Constructor and Description |
---|
KFoldCrossValidationAssessParameterSet()
Constructs a new
KFoldCrossValidationAssessParameterSet with empty parameter
values. |
KFoldCrossValidationAssessParameterSet(DataSet.PartitionMethod dataSplitMethod,
int elementLength,
boolean exceptionIfMPNotComputable,
int k)
Constructs a new
KFoldCrossValidationAssessParameterSet with given parameter
values. |
RepeatedHoldOutAssessParameterSet()
Constructs a new
RepeatedHoldOutAssessParameterSet with empty
parameter values. |
RepeatedHoldOutAssessParameterSet(DataSet.PartitionMethod dataSplitMethod,
int elementLength,
boolean exceptionIfMPNotComputable,
int repeats,
double[] percents)
Constructs a new
RepeatedHoldOutAssessParameterSet with given
parameter values. |
Sampled_RepeatedHoldOutAssessParameterSet()
Constructs a new
Sampled_RepeatedHoldOutAssessParameterSet with
empty parameter values. |
Sampled_RepeatedHoldOutAssessParameterSet(DataSet.PartitionMethod dataSplitMethod,
int elementLength,
boolean exceptionIfMPNotComputable,
int repeats,
int referenceClass,
double percentage,
boolean sameLength)
Constructs a new
Sampled_RepeatedHoldOutAssessParameterSet with
given parameter values. |
Constructor and Description |
---|
DiscreteAlphabetParameterSet()
Creates a new
DiscreteAlphabet.DiscreteAlphabetParameterSet with empty values. |
Modifier and Type | Class and Description |
---|---|
static class |
ParameterSetParser.NotInstantiableException
An
Exception that is thrown if an instance of some class could
not be created. |
static class |
ParameterSetParser.WrongParameterTypeException
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractSelectionParameter.InconsistentCollectionException
This exception is thrown if the
AbstractSelectionParameter is
inconsistent for some reason. |
static class |
SimpleParameter.DatatypeNotValidException
|
static class |
SimpleParameter.IllegalValueException
This exception is thrown if a parameter is not valid.
|
Modifier and Type | Method and Description |
---|---|
static EnumParameter |
RangeParameter.getCollectionOfScales()
Returns a
EnumParameter that allows the user to choose
between different scales. |
boolean |
RangeIterator.next()
Switches to the next value in the collection of values in the specified
range.
|
boolean |
MultiSelectionParameter.next() |
Constructor and Description |
---|
EnumParameter(Class<? extends Enum> enumInstance,
String comment,
boolean required)
The main constructor.
|
EnumParameter(Class<? extends Enum> enumInstance,
String comment,
boolean required,
String defaultValue)
This constructor creates an instance and set the default value.
|
SimpleParameter(DataType datatype,
String name,
String comment,
boolean required,
ParameterValidator validator,
Object defaultVal)
Constructor for a
SimpleParameter with validator and default
value. |
Constructor and Description |
---|
BTMutualInformationParameterSet()
Creates a new
BTMutualInformation.BTMutualInformationParameterSet with empty
parameter values. |
Constructor and Description |
---|
PMMMutualInformationParameterSet()
Creates a new
PMMMutualInformation.PMMMutualInformationParameterSet with empty
parameter values. |
Constructor and Description |
---|
DataColumnParameter(String dataRef,
String name,
String comment,
boolean required,
ParameterValidator validator,
Integer defaultVal)
Creates a new
DataColumnParameter with given name, comment, and reference. |
Constructor and Description |
---|
MultilineSimpleParameter(String name,
String comment,
boolean required,
ParameterValidator validator,
Object defaultVal)
Creates a new
MultilineSimpleParameter with given default value and a ParameterValidator . |