Uses of Class
de.jstacs.utils.ComparableElement

Packages that use ComparableElement

Package	Description
de.jstacs.motifDiscovery	This package provides the framework including the interface for any de novo motif discoverer.
de.jstacs.parameters	This package provides classes for parameters that establish a general convention for the description of parameters as defined in the Parameter-interface.
de.jstacs.utils	This package contains a bundle of useful classes and interfaces like ...

Uses of ComparableElement in de.jstacs.motifDiscovery

Methods in de.jstacs.motifDiscovery that return ComparableElement

Modifier and Type	Method and Description
static ComparableElement<double[],Double>[]	MutableMotifDiscovererToolbox.getSortedInitialParameters(DifferentiableSequenceScore[] funs, MutableMotifDiscovererToolbox.InitMethodForDiffSM[] init, DiffSSBasedOptimizableFunction opt, int n, OutputStream stream, int optimizationSteps) This method allows to initialize the DifferentiableSequenceScore using different MutableMotifDiscovererToolbox.InitMethodForDiffSM.

Uses of ComparableElement in de.jstacs.parameters

Method parameters in de.jstacs.parameters with type arguments of type ComparableElement

Modifier and Type	Method and Description
int	ParameterSetTagger.RankEntryComparator.compare(Map.Entry<K,ComparableElement<V,Integer>> o1, Map.Entry<K,ComparableElement<V,Integer>> o2)
int	ParameterSetTagger.RankEntryComparator.compare(Map.Entry<K,ComparableElement<V,Integer>> o1, Map.Entry<K,ComparableElement<V,Integer>> o2)
String	ParameterSetTagger.toString(Comparator<Map.Entry<String,ComparableElement<Parameter,Integer>>> ec) This method allows to get a String representation where the tagged parameters are sorted in some specific way.

Uses of ComparableElement in de.jstacs.utils

Methods in de.jstacs.utils that return ComparableElement

Modifier and Type	Method and Description
static ComparableElement<String,Double>[]	PFMComparator.find(ComplementableDiscreteAlphabet abc, double[][] pfm, ArrayList<AbstractMap.SimpleEntry<String,double[][]>> knownPFMs, PFMComparator.PFMDistance distance, int minOverlap, int allowMiniShift, boolean pValues, double threshold) This methods finds for a user specified PFM pfm similar PFMs in a list of known PFMs.

Methods in de.jstacs.utils with parameters of type ComparableElement

Modifier and Type	Method and Description
int	ComparableElement.compareTo(ComparableElement<E,C> o)