de.jstacs.data.alphabets
Class GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet
java.lang.Object
de.jstacs.parameters.ParameterSet
de.jstacs.parameters.InstanceParameterSet
de.jstacs.data.Alphabet.AlphabetParameterSet
de.jstacs.data.alphabets.DiscreteAlphabet.DiscreteAlphabetParameterSet
de.jstacs.data.alphabets.GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet
- All Implemented Interfaces:
- GalaxyConvertible, RangeIterator, Storable, Cloneable
- Enclosing class:
- GenericComplementableDiscreteAlphabet
public static class GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet
- extends DiscreteAlphabet.DiscreteAlphabetParameterSet
This class is used as container for the parameters of a GenericComplementableDiscreteAlphabet
.
- Author:
- Jens Keilwagen
Methods inherited from class de.jstacs.parameters.ParameterSet |
fromGalaxy, getErrorMessage, getId, getIndex, getNumberOfParameters, getNumberOfValues, getParameterAt, getParent, hasDefaultOrIsSet, initParameterList, initParameterList, isAtomic, isRanged, makeRanged, next, parametersLoaded, propagateId, recieveId, replaceParametersWithRangedInstance, reset, resetToFirst, setParent, simplify, toGalaxy, valuesToString |
GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet
public GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet()
- This constructor creates an empty parameter set the has to be filled before it can be used to create a
GenericComplementableDiscreteAlphabet
.
GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet
public GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet(String[] alphabet,
boolean caseInsensitive,
int[] revComp)
throws Exception
- The main constructor.
- Parameters:
alphabet
- the array of symbolscaseInsensitive
- indicates if there will be no difference between lowercase and
uppercase letters/symbols in the alphabet (no case sensitivity)revComp
- the array is used to provide the complementarity, revComp[i]
contains the index of the complement of the i-th symbol
- Throws:
Exception
- if some parameter could not be set.
GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet
public GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet(StringBuffer representation)
throws NonParsableException
- The standard constructor for the interface
Storable
.
Creates a new GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet
out of its XML
representation.
- Parameters:
representation
- the XML representation as StringBuffer
- Throws:
NonParsableException
- if the GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet
could not be
reconstructed out of the XML representation (the
StringBuffer
representation
could
not be parsed)- See Also:
Alphabet.AlphabetParameterSet#AlphabetParameterSet(StringBuffer)
,
Storable
loadParameters
protected void loadParameters()
throws Exception
- Description copied from class:
ParameterSet
- Loads the parameters for this
ParameterSet
. This is in most cases
done by calling ParameterSet.initParameterList()
or
ParameterSet.initParameterList(int)
to initialize
ParameterSet.parameters
and afterwards filling
ParameterSet.parameters
with instances of subclasses of
Parameter
.
- Overrides:
loadParameters
in class DiscreteAlphabet.DiscreteAlphabetParameterSet
- Throws:
Exception
- if the parameters could not be loaded- See Also:
Parameter
,
ParameterSet.parameters
,
ParameterSet.initParameterList()
,
ParameterSet.initParameterList(int)