Package de.jstacs.data.alphabets

Provides classes for the representation of discrete and continuous alphabets, including a DNAAlphabet for the most common case of DNA-sequences

See:
Description

Class Summary

ComplementableDiscreteAlphabet	This abstract class indicates that an alphabet can be used to compute the complement.
ContinuousAlphabet	Class for a continuous alphabet.
ContinuousAlphabet.ContinuousAlphabetParameterSet	Class for the ParameterSet of a ContinuousAlphabet.
DiscreteAlphabet	Class for an alphabet that consists of arbitrary Strings.
DiscreteAlphabet.DiscreteAlphabetParameterSet	Class for the ParameterSet of a DiscreteAlphabet.
DiscreteAlphabetMapping	This class implements the transformation of discrete values to other discrete values which define a DiscreteAlphabet.
DNAAlphabet	This class implements the discrete alphabet that is used for DNA.
DNAAlphabet.DNAAlphabetParameterSet	The parameter set for a DNAAlphabet.
GenericComplementableDiscreteAlphabet	This class implements an generic complementable discrete alphabet.
GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet	This class is used as container for the parameters of a GenericComplementableDiscreteAlphabet.

Exception Summary

DoubleSymbolException

A DoubleSymbolException is thrown if a symbol occurred more than once in an alphabet.

Package de.jstacs.data.alphabets Description

Provides classes for the representation of discrete and continuous alphabets, including a DNAAlphabet for the most common case of DNA-sequences.