Uses of Package
de.jstacs.data.alphabets

Packages that use de.jstacs.data.alphabets

de.jstacs.data	Provides classes for the representation of data.
de.jstacs.data.alphabets	Provides classes for the representation of discrete and continuous alphabets, including a DNAAlphabet for the most common case of DNA-sequences
de.jstacs.data.sequences	Provides classes for representing sequences.
de.jstacs.scoringFunctions	Provides ScoringFunctions that can be used in a ScoreClassifier.
de.jstacs.scoringFunctions.mix	Provides ScoringFunctions that are mixtures of other ScoringFunctions.

Classes in de.jstacs.data.alphabets used by de.jstacs.data

DoubleSymbolException
A DoubleSymbolException is thrown if a symbol occurred more than once in an alphabet.

Classes in de.jstacs.data.alphabets used by de.jstacs.data.alphabets

ComplementableDiscreteAlphabet
This abstract class indicates that an alphabet can be used to compute the complement.

ContinuousAlphabet.ContinuousAlphabetParameterSet
Class for the ParameterSet of a ContinuousAlphabet.

DiscreteAlphabet
Class for an alphabet that consists of arbitrary Strings.

DiscreteAlphabet.DiscreteAlphabetParameterSet
Class for the ParameterSet of a DiscreteAlphabet.

DNAAlphabet.DNAAlphabetParameterSet
The parameter set for a DNAAlphabet.

DoubleSymbolException
A DoubleSymbolException is thrown if a symbol occurred more than once in an alphabet.

GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet
This class is used as container for the parameters of a GenericComplementableDiscreteAlphabet.

Classes in de.jstacs.data.alphabets used by de.jstacs.data.sequences

DiscreteAlphabetMapping
This class implements the transformation of discrete values to other discrete values which define a DiscreteAlphabet.

Classes in de.jstacs.data.alphabets used by de.jstacs.scoringFunctions

DiscreteAlphabetMapping
This class implements the transformation of discrete values to other discrete values which define a DiscreteAlphabet.

Classes in de.jstacs.data.alphabets used by de.jstacs.scoringFunctions.mix

ComplementableDiscreteAlphabet
This abstract class indicates that an alphabet can be used to compute the complement.