Uses of Class
de.jstacs.data.alphabets.ComplementableDiscreteAlphabet

Packages that use ComplementableDiscreteAlphabet

de.jstacs.data.alphabets	Provides classes for the representation of discrete and continuous alphabets, including a DNAAlphabet for the most common case of DNA-sequences
de.jstacs.scoringFunctions.mix	Provides ScoringFunctions that are mixtures of other ScoringFunctions.

Uses of ComplementableDiscreteAlphabet in de.jstacs.data.alphabets

Subclasses of ComplementableDiscreteAlphabet in de.jstacs.data.alphabets

class	DNAAlphabet This class implements the discrete alphabet that is used for DNA.
class	GenericComplementableDiscreteAlphabet This class implements an generic complementable discrete alphabet.

Uses of ComplementableDiscreteAlphabet in de.jstacs.scoringFunctions.mix

Methods in de.jstacs.scoringFunctions.mix with parameters of type ComplementableDiscreteAlphabet

static double[][][]

StrandScoringFunction.getReverseComplementDistributions(ComplementableDiscreteAlphabet abc, double[][][] condDistr) This method computes the reverse complement distributions for given conditional distributions.