Uses of Class
de.jstacs.data.alphabets.DiscreteAlphabetMapping

Packages that use DiscreteAlphabetMapping

de.jstacs.data.sequences	Provides classes for representing sequences.
de.jstacs.scoringFunctions	Provides ScoringFunctions that can be used in a ScoreClassifier.

Uses of DiscreteAlphabetMapping in de.jstacs.data.sequences

Fields in de.jstacs.data.sequences declared as DiscreteAlphabetMapping

protected DiscreteAlphabetMapping[]

MappedDiscreteSequence.transformation The DiscreteAlphabetMappings used for mapping the original Sequence.

Methods in de.jstacs.data.sequences with parameters of type DiscreteAlphabetMapping

static AlphabetContainer

MappedDiscreteSequence.getNewAlphabetContainer(AlphabetContainer original, DiscreteAlphabetMapping... transformation) This method allows to create a new AlphabetContainer given an old AlphabetContainer and some DiscreteAlphabetMappings.

Constructors in de.jstacs.data.sequences with parameters of type DiscreteAlphabetMapping

MappedDiscreteSequence(AlphabetContainer originalAlphabetContainer, SequenceAnnotation[] seqAn, DiscreteAlphabetMapping... transformation)
This method allows to create an empty MappedDiscreteSequence.

MappedDiscreteSequence(SimpleDiscreteSequence original, DiscreteAlphabetMapping... transformation)
This method allows to create a MappedDiscreteSequence from a given Sequence and some given DiscreteAlphabetMappings.

Uses of DiscreteAlphabetMapping in de.jstacs.scoringFunctions

Constructors in de.jstacs.scoringFunctions with parameters of type DiscreteAlphabetMapping

MappingScoringFunction(AlphabetContainer originalAlphabetContainer, NormalizableScoringFunction nsf, DiscreteAlphabetMapping... mapping)
The main constructor creating a MappingScoringFunction.