Uses of Package
de.jstacs.data.sequences

Packages that use de.jstacs.data.sequences

de.jstacs.data	Provides classes for the representation of data.
de.jstacs.data.sequences	Provides classes for representing sequences.
de.jstacs.models.discrete.homogeneous

Classes in de.jstacs.data.sequences used by de.jstacs.data

WrongSequenceTypeException
This Exception indicates that the type of the sequence ( ByteSequence, ShortSequence, ...) is not suitable for a given AlphabetContainer.

Classes in de.jstacs.data.sequences used by de.jstacs.data.sequences

ArbitrarySequence
This class is for any continuous or hybrid sequence.

ByteSequence
This class is for sequences with the alphabet symbols encoded as bytes and can therefore be used for discrete AlphabetContainers with alphabets that use only few symbols.

DiscreteSequence
This is the super class of discrete sequences.

IntSequence
This class is for sequences with the alphabet symbols encoded as ints and can therefore be used for discrete AlphabetContainers with alphabets that use a huge number of symbols.

MultiDimensionalDiscreteSequence
This class is for multidimensional sequences that can be used, for instance, for phylogenetic footprinting.

PermutedSequence
This class is for permuted sequences.

ShortSequence
This class is for sequences with the alphabet symbols encoded as shortss and can therefore be used for discrete AlphabetContainers with alphabets that use many different symbols.

SimpleDiscreteSequence
This is the main class for any discrete sequence.

SparseSequence
This class is an implementation for sequences on one alphabet with length 4.

WrongSequenceTypeException
This Exception indicates that the type of the sequence ( ByteSequence, ShortSequence, ...) is not suitable for a given AlphabetContainer.

Classes in de.jstacs.data.sequences used by de.jstacs.models.discrete.homogeneous

WrongSequenceTypeException
This Exception indicates that the type of the sequence ( ByteSequence, ShortSequence, ...) is not suitable for a given AlphabetContainer.