de.jstacs.io
Class SimpleStringExtractor

java.lang.Object
  de.jstacs.io.AbstractStringExtractor
      de.jstacs.io.SimpleStringExtractor

All Implemented Interfaces:

Enumeration<String>

public class SimpleStringExtractor
extends AbstractStringExtractor

This is a simple class that extracts Strings. It enables the user to create a Sample from a bunch of Strings. It might be useful if one likes to select or create the Strings by an own procedure. The extracted Strings which should be parsed to Sequence will not be annotated, since AbstractStringExtractor.getCurrentSequenceAnnotations() always returns null.

Author:

Jens Keilwagen

Field Summary

Fields inherited from class de.jstacs.io.AbstractStringExtractor

annotation, FASTA, ignore, ignorePattern, USUALLY

Constructor Summary

SimpleStringExtractor(String... strings)
This constructor packs the Strings in an instance of SimpleStringExtractor.

Method Summary

boolean	hasMoreElements()
String	nextElement()

Methods inherited from class de.jstacs.io.AbstractStringExtractor

getAnnotation, getCurrentSequenceAnnotations

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleStringExtractor

public SimpleStringExtractor(String... strings)

This constructor packs the Strings in an instance of SimpleStringExtractor.

Parameters:

strings - the Strings that will be packed

See Also:

AbstractStringExtractor.AbstractStringExtractor(char)

Method Detail

hasMoreElements

public boolean hasMoreElements()

nextElement

public String nextElement()