Uses of Class
de.jstacs.models.hmm.training.SamplingHMMTrainingParameterSet

Packages that use SamplingHMMTrainingParameterSet

de.jstacs.models.hmm.models

The package provides different implementations of hidden Markov models based on AbstractHMM

Uses of SamplingHMMTrainingParameterSet in de.jstacs.models.hmm.models

Constructors in de.jstacs.models.hmm.models with parameters of type SamplingHMMTrainingParameterSet

SamplingHigherOrderHMM(SamplingHMMTrainingParameterSet trainingParameterSet, String[] name, int[] emissionIdx, boolean[] forward, SamplingEmission[] emission, TransitionElement... te)
This is the main constructor.

SamplingPhyloHMM(SamplingHMMTrainingParameterSet trainingParameterSet, String[] name, int[] emissionIdx, boolean[] forward, PhyloDiscreteEmission[] emission, TransitionElement... te)
This is the main constructor for a hidden markov model with phylogenetic emission(s) This model can be trained using a metropolis hastings algorithm