Uses of Package
de.jstacs.scoringFunctions.homogeneous

Packages that use de.jstacs.scoringFunctions.homogeneous

de.jstacs.scoringFunctions.homogeneous	Provides ScoringFunctions that are homogeneous, i.e. model probabilities or scores independent of the position within a sequence
de.jstacs.scoringFunctions.mix.motifSearch

Classes in de.jstacs.scoringFunctions.homogeneous used by de.jstacs.scoringFunctions.homogeneous

HMM0ScoringFunction
This scoring function implements a homogeneous Markov model of order zero (hMM(0)) for a fixed sequence length.

HMMScoringFunction
This scoring function implements a homogeneous Markov model of arbitrary order for any sequence length.

HomogeneousScoringFunction
This is the main class for all homogeneous ScoringFunctions.

Classes in de.jstacs.scoringFunctions.homogeneous used by de.jstacs.scoringFunctions.mix.motifSearch

HomogeneousScoringFunction
This is the main class for all homogeneous ScoringFunctions.