de.jstacs.data
Class DinucleotideProperty.MedianSmoothing

java.lang.Object
  de.jstacs.data.DinucleotideProperty.Smoothing
      de.jstacs.data.DinucleotideProperty.MedianSmoothing

Enclosing class:

DinucleotideProperty

public static class DinucleotideProperty.MedianSmoothing
extends DinucleotideProperty.Smoothing

Smoothing by median using a pre-defined window width.

Author:

Jan Grau

Constructor Summary

DinucleotideProperty.MedianSmoothing(int width)
Creates a new DinucleotideProperty.MedianSmoothing that computes the median over windows of width width.

Method Summary

double[]	smooth(double[] original) Returns the smoothed version of original.
String	toString() Returns a String representation of this smoothing method.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

DinucleotideProperty.MedianSmoothing

public DinucleotideProperty.MedianSmoothing(int width)

Creates a new DinucleotideProperty.MedianSmoothing that computes the median over windows of width width.

Parameters:

width - the width of the window.

Method Detail

smooth

public double[] smooth(double[] original)

Description copied from class: DinucleotideProperty.Smoothing

Returns the smoothed version of original. The length of the returned array and original may differ.

Specified by:

smooth in class DinucleotideProperty.Smoothing

Parameters:

original - the original series of values

Returns:

the smoothed version

toString

public String toString()

Description copied from class: DinucleotideProperty.Smoothing

Returns a String representation of this smoothing method.

Specified by:

toString in class DinucleotideProperty.Smoothing