Uses of Class
de.jstacs.data.sequences.MultiDimensionalSequence

Packages that use MultiDimensionalSequence

de.jstacs.data.sequences

Provides classes for representing sequences. The implementations of sequences currently include DiscreteSequences prepared for alphabets of different sizes, and ArbitrarySequences that may contain continuous values as well. As sub-package provides the facilities to annotate Sequences.

Uses of MultiDimensionalSequence in de.jstacs.data.sequences

Subclasses of MultiDimensionalSequence in de.jstacs.data.sequences

class	MultiDimensionalArbitrarySequence This class is for multidimensional arbitrary sequences.
class	MultiDimensionalDiscreteSequence This class is for multidimensional discrete sequences that can be used, for instance, for phylogenetic footprinting.

Methods in de.jstacs.data.sequences that return MultiDimensionalSequence

MultiDimensionalSequence<T>	MultiDimensionalSequence.complement(int start, int end)
protected MultiDimensionalSequence<T>	MultiDimensionalSequence.flatCloneWithoutAnnotation()
protected abstract MultiDimensionalSequence<T>	MultiDimensionalSequence.getInstance(SequenceAnnotation[] seqAn, Sequence... seqs)
MultiDimensionalSequence<T>	MultiDimensionalSequence.reverseComplement(int start, int end)