Package de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete

Class Summary

AbstractConditionalDiscreteEmission	The abstract super class of discrete emissions.
DiscreteEmission	This class implements a simple discrete emission without any condition.
PhyloDiscreteEmission	Phylogenetic discrete emission This class uses a phylogenetic tree to describe multidimensional data It implements Felsensteins model for nucleotide substitution (F81)
ReferenceSequenceDiscreteEmission	This class implements a discrete emission that depends on some ReferenceSequenceAnnotation at a certain reference position.