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Packages that use ComparableElement | |
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de.jstacs.motifDiscovery | This package provides the framework including the interface for any de novo motif discoverer. |
de.jstacs.parameters | This package provides classes for parameters that establish a general convention for the description of parameters
as defined in the Parameter -interface. |
de.jstacs.utils | This package contains a bundle of useful classes and interfaces like ... |
Uses of ComparableElement in de.jstacs.motifDiscovery |
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Methods in de.jstacs.motifDiscovery that return ComparableElement | |
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static ComparableElement<double[],Double>[] |
MutableMotifDiscovererToolbox.getSortedInitialParameters(DifferentiableSequenceScore[] funs,
MutableMotifDiscovererToolbox.InitMethodForDiffSM[] init,
DiffSSBasedOptimizableFunction opt,
int n,
OutputStream stream,
int optimizationSteps)
This method allows to initialize the DifferentiableSequenceScore using different MutableMotifDiscovererToolbox.InitMethodForDiffSM . |
Uses of ComparableElement in de.jstacs.parameters |
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Method parameters in de.jstacs.parameters with type arguments of type ComparableElement | |
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int |
ParameterSetTagger.RankEntryComparator.compare(Map.Entry<K,ComparableElement<V,Integer>> o1,
Map.Entry<K,ComparableElement<V,Integer>> o2)
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int |
ParameterSetTagger.RankEntryComparator.compare(Map.Entry<K,ComparableElement<V,Integer>> o1,
Map.Entry<K,ComparableElement<V,Integer>> o2)
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String |
ParameterSetTagger.toString(Comparator<Map.Entry<String,ComparableElement<Parameter,Integer>>> ec)
This method allows to get a String representation where the tagged parameters are sorted in some specific way. |
Uses of ComparableElement in de.jstacs.utils |
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Methods in de.jstacs.utils that return ComparableElement | |
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static ComparableElement<String,Double>[] |
PFMComparator.find(ComplementableDiscreteAlphabet abc,
double[][] pfm,
ArrayList<AbstractMap.SimpleEntry<String,double[][]>> knownPFMs,
PFMComparator.PFMDistance distance,
int minOverlap,
int allowMiniShift,
boolean pValues,
double threshold)
This methods finds for a user specified PFM pfm similar PFMs in a list of known PFMs. |
Methods in de.jstacs.utils with parameters of type ComparableElement | |
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int |
ComparableElement.compareTo(ComparableElement<E,C> o)
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