Uses of Class
de.jstacs.utils.PFMComparator.PFMDistance

Packages that use PFMComparator.PFMDistance

de.jstacs.utils

This package contains a bundle of useful classes and interfaces like ...

Uses of PFMComparator.PFMDistance in de.jstacs.utils

Subclasses of PFMComparator.PFMDistance in de.jstacs.utils

static class	PFMComparator.NormalizedEuclideanDistance This class implements the normalized Euclidean distance.
static class	PFMComparator.OneMinusPearsonCorrelationCoefficient This class implements the Pearson correlation coefficient.
static class	PFMComparator.SymmetricKullbackLeiblerDivergence This class implements the symmetric Kullback-Leibler-divergence.

Methods in de.jstacs.utils with parameters of type PFMComparator.PFMDistance

static ComparableElement<String,Double>[]

PFMComparator.find(ComplementableDiscreteAlphabet abc, double[][] pfm, ArrayList<AbstractMap.SimpleEntry<String,double[][]>> knownPFMs, PFMComparator.PFMDistance distance, int minOverlap, int allowMiniShift, boolean pValues, double threshold) This methods finds for a user specified PFM pfm similar PFMs in a list of known PFMs.