Uses of Class
de.jstacs.AnnotatedEntity

Packages that use AnnotatedEntity

Package	Description
de.jstacs	This package is the root package for the most and important packages.
de.jstacs.classifiers	This package provides the framework for any classifier.
de.jstacs.parameters	This package provides classes for parameters that establish a general convention for the description of parameters as defined in the Parameter-interface.
de.jstacs.results	This package provides classes for results and sets of results.
de.jstacs.tools
de.jstacs.tools.ui.galaxy

Uses of AnnotatedEntity in de.jstacs

Classes in de.jstacs with type parameters of type AnnotatedEntity

Modifier and Type	Class and Description
class	AnnotatedEntityList<T extends AnnotatedEntity> Class for a list of AnnotatedEntitys where elements can be accessed either by index or by the name of the AnnotatedEntity.

Methods in de.jstacs that return AnnotatedEntity

Modifier and Type	Method and Description
<E extends T> E[]	AnnotatedEntityList.toArray(E[] ar) Returns the AnnotatedEntitys in this list as an array.

Methods in de.jstacs with parameters of type AnnotatedEntity

Modifier and Type	Method and Description
void	AnnotatedEntityList.add(T... entities) Adds all AnnotatedEntitys in entities to the list.
<E extends T> E[]	AnnotatedEntityList.toArray(E[] ar) Returns the AnnotatedEntitys in this list as an array.

Uses of AnnotatedEntity in de.jstacs.classifiers

Subclasses of AnnotatedEntity in de.jstacs.classifiers

Modifier and Type	Class and Description
static class	AbstractScoreBasedClassifier.DoubleTableResult This class is for Results given as a table of double s.

Uses of AnnotatedEntity in de.jstacs.parameters

Subclasses of AnnotatedEntity in de.jstacs.parameters

Modifier and Type	Class and Description
class	AbstractSelectionParameter Class for a collection parameter, i.e.
class	EnumParameter This class implements a SelectionParameter based on an Enum.
class	FileParameter Class for a Parameter that represents a local file.
class	MultiSelectionParameter Class for a Parameter that provides a collection of possible values.
class	Parameter Abstract class for a parameter that shall be used as the parameter of some method, constructor, etc.
class	ParameterSetContainer Class for a ParameterSetContainer that contains a ParameterSet as value.
class	RangeParameter Class for a parameter wrapper that allows SimpleParameters to be set to a set of values. These values may be given either as a list of values separated by spaces, as a range between a first and a last value with a given number of steps between these values, or a single value.
class	SelectionParameter Class for a collection parameter, i.e.
class	SimpleParameter Class for a "simple" parameter.

Uses of AnnotatedEntity in de.jstacs.results

Subclasses of AnnotatedEntity in de.jstacs.results

Modifier and Type	Class and Description
class	CategoricalResult A class for categorical results (i.e.
class	DataSetResult Result that contains a DataSet.
class	ImageResult A class for results that are images of the PNG format.
class	ListResult Class for a Result that contains a list or a matrix, respectively, of ResultSets.
class	NumericalResult Class for numerical Result values.
class	PlotGeneratorResult Class for a Result that may be used to generate plots for different output formats using GraphicsAdaptor sub-classes.
class	Result The abstract class for any result.
class	ResultSetResult Class for a Result that contains a single ResultSet.
class	SimpleResult Abstract class for a Result with a value of a primitive data type or String.
class	StorableResult Class for Results that are Storables.
class	TextResult Class for a result that is basically a text file (or its contents).

Uses of AnnotatedEntity in de.jstacs.tools

Subclasses of AnnotatedEntity in de.jstacs.tools

Modifier and Type	Class and Description
class	DataColumnParameter SimpleParameter that represents a data column parameter in Galaxy and JstacsFX.
class	ToolResult Class for the results of a JstacsTool.

Uses of AnnotatedEntity in de.jstacs.tools.ui.galaxy

Subclasses of AnnotatedEntity in de.jstacs.tools.ui.galaxy

Modifier and Type	Class and Description
static class	GalaxyAdaptor.FileResult Result for files that are results of some computation.
static class	GalaxyAdaptor.HeadResult Class for a result that is basically a CategoricalResult, but has its own name for checking purposes.
static class	GalaxyAdaptor.LineBasedResult Superclass for all Result that may be saved line by line.
static class	GalaxyAdaptor.LinkedImageResult Class for an ImageResult that is linked to a file that can be downloaded.
class	MultilineSimpleParameter An extension of SimpleParameter that renders as a textarea in Galaxy, which is only suitable for DataType.STRINGs.