Uses of Package
de.jstacs.results

Packages that use de.jstacs.results

Package	Description
de.jstacs.algorithms.alignment	Provides classes for alignments.
de.jstacs.classifiers	This package provides the framework for any classifier.
de.jstacs.classifiers.assessment	This package allows to assess classifiers. It contains the class ClassifierAssessment that is used as a super-class of all implemented methodologies of an assessment to assess classifiers.
de.jstacs.classifiers.differentiableSequenceScoreBased	Provides the classes for Classifiers that are based on SequenceScores. It includes a sub-package for discriminative objective functions, namely conditional likelihood and supervised posterior, and a separate sub-package for the parameter priors, that can be used for the supervised posterior.
de.jstacs.classifiers.differentiableSequenceScoreBased.sampling	Provides the classes for AbstractScoreBasedClassifiers that are based on SamplingDifferentiableStatisticalModels and that sample parameters using the Metropolis-Hastings algorithm.
de.jstacs.classifiers.performanceMeasures	This package provides the implementations of performance measures that can be used to assess any classifier.
de.jstacs.classifiers.trainSMBased	Provides the classes for Classifiers that are based on TrainableStatisticalModels.
de.jstacs.classifiers.utils	Provides some useful classes for working with classifiers.
de.jstacs.data	Provides classes for the representation of data. The base classes to represent data are Alphabet and AlphabetContainer for representing alphabets, Sequence and its sub-classes to represent continuous and discrete sequences, and DataSet to represent data sets comprising a set of sequences.
de.jstacs.data.sequences.annotation	Provides the facilities to annotate Sequences using a number of pre-defined annotation types, or additional implementations of the SequenceAnnotation class.
de.jstacs.motifDiscovery	This package provides the framework including the interface for any de novo motif discoverer.
de.jstacs.results	This package provides classes for results and sets of results.
de.jstacs.results.savers
de.jstacs.sequenceScores	Provides all SequenceScores, which can be used to score a Sequence, typically using some model assumptions.
de.jstacs.sequenceScores.differentiable
de.jstacs.sequenceScores.statisticalModels.trainable	Provides all TrainableStatisticalModels, which can be learned from a single DataSet.
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.homogeneous
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous	This package contains various inhomogeneous models.
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.shared
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models	The package provides different implementations of hidden Markov models based on AbstractHMM.
de.jstacs.sequenceScores.statisticalModels.trainable.mixture	This package is the super package for any mixture model.
de.jstacs.tools
de.jstacs.tools.ui.galaxy
de.jstacs.utils	This package contains a bundle of useful classes and interfaces like ...

Classes in de.jstacs.results used by de.jstacs.algorithms.alignment

Class and Description
Result The abstract class for any result.

Classes in de.jstacs.results used by de.jstacs.classifiers

Class and Description
CategoricalResult A class for categorical results (i.e.
ImageResult A class for results that are images of the PNG format.
NumericalResultSet Class for a set of numerical result values, which are all of the type NumericalResult.
Result The abstract class for any result.
ResultSet Class for a set of Results which provides methods to access single Results in the set, to retrieve the number of Results in the set, to get a String representation or an XML representation of all the Results in the set.

Classes in de.jstacs.results used by de.jstacs.classifiers.assessment

Class and Description
ListResult Class for a Result that contains a list or a matrix, respectively, of ResultSets.
MeanResultSet Class that computes the mean and the standard error of a series of NumericalResultSets.
MeanResultSet.AdditionImpossibleException Class for the exception that is thrown if two MeanResultSets should be added that do not match.
MeanResultSet.InconsistentResultNumberException Class for the exception that is thrown if a NumericalResultSet is added to the MeanResultSet that has a number of results which is not equal to the number of results of the previously added results.
Result The abstract class for any result.

Classes in de.jstacs.results used by de.jstacs.classifiers.differentiableSequenceScoreBased

Class and Description
CategoricalResult A class for categorical results (i.e.
NumericalResultSet Class for a set of numerical result values, which are all of the type NumericalResult.

Classes in de.jstacs.results used by de.jstacs.classifiers.differentiableSequenceScoreBased.sampling

Class and Description
CategoricalResult A class for categorical results (i.e.
NumericalResultSet Class for a set of numerical result values, which are all of the type NumericalResult.

Classes in de.jstacs.results used by de.jstacs.classifiers.performanceMeasures

Class and Description
NumericalResultSet Class for a set of numerical result values, which are all of the type NumericalResult.
ResultSet Class for a set of Results which provides methods to access single Results in the set, to retrieve the number of Results in the set, to get a String representation or an XML representation of all the Results in the set.

Classes in de.jstacs.results used by de.jstacs.classifiers.trainSMBased

Class and Description
CategoricalResult A class for categorical results (i.e.
NumericalResultSet Class for a set of numerical result values, which are all of the type NumericalResult.
ResultSet Class for a set of Results which provides methods to access single Results in the set, to retrieve the number of Results in the set, to get a String representation or an XML representation of all the Results in the set.

Classes in de.jstacs.results used by de.jstacs.classifiers.utils

Class and Description
ImageResult A class for results that are images of the PNG format.

Classes in de.jstacs.results used by de.jstacs.data

Class and Description
ImageResult A class for results that are images of the PNG format.

Classes in de.jstacs.results used by de.jstacs.data.sequences.annotation

Class and Description
Result The abstract class for any result.
ResultSet Class for a set of Results which provides methods to access single Results in the set, to retrieve the number of Results in the set, to get a String representation or an XML representation of all the Results in the set.

Classes in de.jstacs.results used by de.jstacs.motifDiscovery

Class and Description
ImageResult A class for results that are images of the PNG format.
ListResult Class for a Result that contains a list or a matrix, respectively, of ResultSets.

Classes in de.jstacs.results used by de.jstacs.results

Class and Description
ListResult Class for a Result that contains a list or a matrix, respectively, of ResultSets.
MeanResultSet Class that computes the mean and the standard error of a series of NumericalResultSets.
MeanResultSet.AdditionImpossibleException Class for the exception that is thrown if two MeanResultSets should be added that do not match.
MeanResultSet.InconsistentResultNumberException Class for the exception that is thrown if a NumericalResultSet is added to the MeanResultSet that has a number of results which is not equal to the number of results of the previously added results.
NumericalResult Class for numerical Result values.
NumericalResultSet Class for a set of numerical result values, which are all of the type NumericalResult.
PlotGeneratorResult.PlotGenerator Interface for a class that may generate a plot using the specified GraphicsAdaptor.
Result The abstract class for any result.
ResultSet Class for a set of Results which provides methods to access single Results in the set, to retrieve the number of Results in the set, to get a String representation or an XML representation of all the Results in the set.
SimpleResult Abstract class for a Result with a value of a primitive data type or String.

Classes in de.jstacs.results used by de.jstacs.results.savers

Class and Description
DataSetResult Result that contains a DataSet.
ListResult Class for a Result that contains a list or a matrix, respectively, of ResultSets.
PlotGeneratorResult Class for a Result that may be used to generate plots for different output formats using GraphicsAdaptor sub-classes.
Result The abstract class for any result.
ResultSetResult Class for a Result that contains a single ResultSet.
StorableResult Class for Results that are Storables.
TextResult Class for a result that is basically a text file (or its contents).

Classes in de.jstacs.results used by de.jstacs.sequenceScores

Class and Description
NumericalResultSet Class for a set of numerical result values, which are all of the type NumericalResult.
ResultSet Class for a set of Results which provides methods to access single Results in the set, to retrieve the number of Results in the set, to get a String representation or an XML representation of all the Results in the set.

Classes in de.jstacs.results used by de.jstacs.sequenceScores.differentiable

Class and Description
NumericalResultSet Class for a set of numerical result values, which are all of the type NumericalResult.
ResultSet Class for a set of Results which provides methods to access single Results in the set, to retrieve the number of Results in the set, to get a String representation or an XML representation of all the Results in the set.

Classes in de.jstacs.results used by de.jstacs.sequenceScores.statisticalModels.trainable

Class and Description
NumericalResultSet Class for a set of numerical result values, which are all of the type NumericalResult.
ResultSet Class for a set of Results which provides methods to access single Results in the set, to retrieve the number of Results in the set, to get a String representation or an XML representation of all the Results in the set.

Classes in de.jstacs.results used by de.jstacs.sequenceScores.statisticalModels.trainable.discrete.homogeneous

Class and Description
NumericalResultSet Class for a set of numerical result values, which are all of the type NumericalResult.

Classes in de.jstacs.results used by de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous

Class and Description
NumericalResultSet Class for a set of numerical result values, which are all of the type NumericalResult.

Classes in de.jstacs.results used by de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.shared

Class and Description
CategoricalResult A class for categorical results (i.e.

Classes in de.jstacs.results used by de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models

Class and Description
NumericalResultSet Class for a set of numerical result values, which are all of the type NumericalResult.
ResultSet Class for a set of Results which provides methods to access single Results in the set, to retrieve the number of Results in the set, to get a String representation or an XML representation of all the Results in the set.

Classes in de.jstacs.results used by de.jstacs.sequenceScores.statisticalModels.trainable.mixture

Class and Description
NumericalResultSet Class for a set of numerical result values, which are all of the type NumericalResult.
ResultSet Class for a set of Results which provides methods to access single Results in the set, to retrieve the number of Results in the set, to get a String representation or an XML representation of all the Results in the set.

Classes in de.jstacs.results used by de.jstacs.tools

Class and Description
ListResult Class for a Result that contains a list or a matrix, respectively, of ResultSets.
Result The abstract class for any result.
ResultSet Class for a set of Results which provides methods to access single Results in the set, to retrieve the number of Results in the set, to get a String representation or an XML representation of all the Results in the set.
ResultSetResult Class for a Result that contains a single ResultSet.

Classes in de.jstacs.results used by de.jstacs.tools.ui.galaxy

Class and Description
CategoricalResult A class for categorical results (i.e.
ImageResult A class for results that are images of the PNG format.
Result The abstract class for any result.
ResultSet Class for a set of Results which provides methods to access single Results in the set, to retrieve the number of Results in the set, to get a String representation or an XML representation of all the Results in the set.
SimpleResult Abstract class for a Result with a value of a primitive data type or String.

Classes in de.jstacs.results used by de.jstacs.utils

Class and Description
PlotGeneratorResult.PlotGenerator Interface for a class that may generate a plot using the specified GraphicsAdaptor.