Uses of Class
de.jstacs.algorithms.alignment.Alignment.AlignmentType

Packages that use Alignment.AlignmentType

Package	Description
de.jstacs.algorithms.alignment	Provides classes for alignments.

Uses of Alignment.AlignmentType in de.jstacs.algorithms.alignment

Fields in de.jstacs.algorithms.alignment declared as Alignment.AlignmentType

Modifier and Type	Field and Description
protected Alignment.AlignmentType	Alignment.type The type of the alignment

Methods in de.jstacs.algorithms.alignment that return Alignment.AlignmentType

Modifier and Type	Method and Description
static Alignment.AlignmentType	Alignment.AlignmentType.valueOf(String name) Returns the enum constant of this type with the specified name.
static Alignment.AlignmentType[]	Alignment.AlignmentType.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in de.jstacs.algorithms.alignment with parameters of type Alignment.AlignmentType

Modifier and Type	Method and Description
boolean	Alignment.computeAlignment(Alignment.AlignmentType type, Sequence s1, int startS1, int endS1, Sequence s2, int startS2, int endS2) Computes the alignment between s1 and s2 starting from startS1 and startS2 until endS1 and endS2, respectively.
boolean	Alignment.computeAlignment(Alignment.AlignmentType type, Sequence s1, Sequence s2) Computes the alignment between s1 and s2.
PairwiseStringAlignment	Alignment.getAlignment(Alignment.AlignmentType type, Sequence s1, int startS1, int endS1, Sequence s2, int startS2, int endS2) Computes and returns the alignment of s1 and s2 (Alignment.Alignment(Costs)).
PairwiseStringAlignment	Alignment.getAlignment(Alignment.AlignmentType type, Sequence s1, Sequence s2) Computes and returns the alignment of s1 and s2 (Alignment.Alignment(Costs)).