Package | Description |
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de.jstacs.algorithms.alignment |
Provides classes for alignments.
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de.jstacs.algorithms.alignment.cost |
Provides classes for cost functions used in alignments.
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Class and Description |
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AffineCosts
This class implements affine gap costs, i.e., the costs for starting a new gap are given by
start , and
the costs for elongating a gap by one position are given by elong . |
Costs
The general interface for the costs of an alignment.
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Class and Description |
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Costs
The general interface for the costs of an alignment.
|