Package | Description |
---|---|
de.jstacs |
This package is the root package for the most and important packages.
|
de.jstacs.data.alphabets |
Provides classes for the representation of discrete and continuous alphabets, including a
DNAAlphabet for the most common case of DNA-sequences. |
Modifier and Type | Method and Description |
---|---|
static Singleton |
Singleton.SingletonHandler.getSingelton(Class<? extends Singleton> singletonClass)
This method helps to retrieve the single instance of a
Singleton singletonClass . |
Modifier and Type | Method and Description |
---|---|
static Singleton |
Singleton.SingletonHandler.getSingelton(Class<? extends Singleton> singletonClass)
This method helps to retrieve the single instance of a
Singleton singletonClass . |
Modifier and Type | Class and Description |
---|---|
class |
DNAAlphabet
This class implements the discrete alphabet that is used for DNA.
|
static class |
DNAAlphabet.DNAAlphabetParameterSet
The parameter set for a
DNAAlphabet . |
class |
DNAAlphabetContainer
This class implements a singleton for an
AlphabetContainer that can be used for DNA. |
static class |
DNAAlphabetContainer.DNAAlphabetContainerParameterSet
This class implements a singleton for the
ParameterSet of a DNAAlphabetContainer . |
class |
IUPACDNAAlphabet
This class implements a discrete alphabet for the IUPAC DNA code.
|
static class |
IUPACDNAAlphabet.IUPACDNAAlphabetParameterSet
The parameter set for a
IUPACDNAAlphabet . |
class |
ProteinAlphabet
This class implements the discrete alphabet that is used for proteins (one letter code).
|
static class |
ProteinAlphabet.ProteinAlphabetParameterSet
The parameter set for a
ProteinAlphabet . |