DNAAlphabet
for the most common case of DNA-sequences.See: Description
Class | Description |
---|---|
Alphabet |
Class for a set of symbols, i.e.
|
Alphabet.AlphabetParameterSet<T extends Alphabet> |
The super class for the
InstanceParameterSet of any
Alphabet . |
ComplementableDiscreteAlphabet |
This abstract class indicates that an alphabet can be used to compute the
complement.
|
ContinuousAlphabet |
Class for a continuous alphabet.
|
ContinuousAlphabet.ContinuousAlphabetParameterSet |
Class for the
ParameterSet of a
ContinuousAlphabet . |
DiscreteAlphabet |
Class for an alphabet that consists of arbitrary
String s. |
DiscreteAlphabet.DiscreteAlphabetParameterSet |
Class for the
ParameterSet of a
DiscreteAlphabet . |
DiscreteAlphabetMapping |
This class implements the transformation of discrete values to other discrete values
which define a
DiscreteAlphabet . |
DNAAlphabet |
This class implements the discrete alphabet that is used for DNA.
|
DNAAlphabet.DNAAlphabetParameterSet |
The parameter set for a
DNAAlphabet . |
DNAAlphabetContainer |
This class implements a singleton for an
AlphabetContainer that can be used for DNA. |
DNAAlphabetContainer.DNAAlphabetContainerParameterSet |
This class implements a singleton for the
ParameterSet of a DNAAlphabetContainer . |
GenericComplementableDiscreteAlphabet |
This class implements an generic complementable discrete alphabet.
|
GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet |
This class is used as container for the parameters of a
GenericComplementableDiscreteAlphabet . |
IUPACDNAAlphabet |
This class implements a discrete alphabet for the IUPAC DNA code.
|
IUPACDNAAlphabet.IUPACDNAAlphabetParameterSet |
The parameter set for a
IUPACDNAAlphabet . |
ProteinAlphabet |
This class implements the discrete alphabet that is used for proteins (one letter code).
|
ProteinAlphabet.ProteinAlphabetParameterSet |
The parameter set for a
ProteinAlphabet . |
Exception | Description |
---|---|
DoubleSymbolException |
A
DoubleSymbolException is thrown if a symbol occurred more than once
in an alphabet. |
DNAAlphabet
for the most common case of DNA-sequences.