Package de.jstacs.data.bioJava

Provides an adapter between the representation of data in BioJava and the representation used in Jstacs.

See: Description

Class Summary

Class	Description
BioJavaAdapter	This class provides static methods to convert BioJava datatypes ( SequenceIterator, Sequence) to DataSets and vice versa.
SimpleSequenceIterator	Class that implements the SequenceIterator interface of BioJava in a simple way, backed by an array of Sequences.

Package de.jstacs.data.bioJava Description

Provides an adapter between the representation of data in BioJava and the representation used in Jstacs. Using BioJava, one can load data from all of the common file formats and sequence databases into Jstacs.