DiscreteSequence
s prepared for alphabets of different sizes, and ArbitrarySequence
s that may
contain continuous values as well.Sequence
s.See: Description
Class | Description |
---|---|
ArbitraryFloatSequence |
This class is for any continuous or hybrid sequence.
|
ArbitrarySequence |
This class is for any continuous or hybrid sequence.
|
ByteSequence |
This class is for sequences with the alphabet symbols encoded as
byte s and can therefore be used for discrete
AlphabetContainer s with alphabets that use only few symbols. |
CyclicSequenceAdaptor<T> |
This class is an adapter for sequence to mimic cyclic sequences.
|
IntSequence |
This class is for sequences with the alphabet symbols encoded as
int s and can therefore be used for discrete
AlphabetContainer s with alphabets that use a huge number of symbols. |
MappedDiscreteSequence |
This class allows to map a discrete
Sequence to an new Sequence using some DiscreteAlphabetMapping s. |
MultiDimensionalArbitrarySequence |
This class is for multidimensional arbitrary sequences.
|
MultiDimensionalDiscreteSequence |
This class is for multidimensional discrete sequences that can be used, for instance, for phylogenetic footprinting.
|
MultiDimensionalSequence<T> |
This class is for multidimensional sequences that can be used, for instance, for phylogenetic footprinting.
|
PermutedSequence<T> |
This class is for permuted sequences.
|
Sequence<T> |
This is the main class for all sequences.
|
Sequence.CompositeSequence<T> |
The class handles composite
Sequence s. |
Sequence.RecursiveSequence<T> |
This is the main class for subsequences, composite sequences, ...
|
Sequence.SubSequence<T> |
This class handles subsequences.
|
ShortSequence |
This class is for sequences with the alphabet symbols encoded as
shorts s and can therefore be used for discrete
AlphabetContainer s with alphabets that use many different symbols. |
SimpleDiscreteSequence |
This is the main class for any discrete sequence.
|
SparseSequence |
This class is an implementation for sequences on one alphabet with length 4.
|
Exception | Description |
---|---|
WrongSequenceTypeException |
This
Exception indicates that the type of the sequence (
ByteSequence , ShortSequence , ...) is not suitable for a given
AlphabetContainer . |
DiscreteSequence
s prepared for alphabets of different sizes, and ArbitrarySequence
s that may
contain continuous values as well.Sequence
s.