Package | Description |
---|---|
de.jstacs.data |
Provides classes for the representation of data.
The base classes to represent data are Alphabet and AlphabetContainer for representing alphabets,
Sequence and its sub-classes to represent continuous and discrete sequences, and
DataSet to represent data sets comprising a set of sequences. |
de.jstacs.data.alphabets |
Provides classes for the representation of discrete and continuous alphabets, including a
DNAAlphabet for the most common case of DNA-sequences. |
Modifier and Type | Class and Description |
---|---|
class |
AlphabetContainerParameterSet
Class for the
ParameterSet of an AlphabetContainer . |
Modifier and Type | Field and Description |
---|---|
protected AlphabetContainer.AbstractAlphabetContainerParameterSet<?> |
AlphabetContainer.parameters
The parameters for this instance.
|
Modifier and Type | Method and Description |
---|---|
AlphabetContainer.AbstractAlphabetContainerParameterSet<T> |
AlphabetContainer.AbstractAlphabetContainerParameterSet.clone() |
AlphabetContainer.AbstractAlphabetContainerParameterSet<? extends AlphabetContainer> |
AlphabetContainer.getCurrentParameterSet() |
Modifier and Type | Class and Description |
---|---|
static class |
DNAAlphabetContainer.DNAAlphabetContainerParameterSet
This class implements a singleton for the
ParameterSet of a DNAAlphabetContainer . |